AT1G58220.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Homeodomain-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to jasmonic acid stimulus, response to abscisic acid stimulus, response to salicylic acid stimulus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT1G09710.1); Has 27282 Blast hits to 17301 proteins in 1269 species: Archae - 28; Bacteria - 5926; Metazoa - 10247; Fungi - 4749; Plants - 1505; Viruses - 560; Other Eukaryotes - 4267 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:21558388..21562669 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 86286.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.60 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||
| Length | 834 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVDNSNNKKR KEFISEADIA TLLQRYDTVT ILKLLQEMAY YAEAKMNWNE LVKKTSTGIT SAREYQLLWR HLAYRDSLVP VGNNARVLDD DSDMECELEA 101: SPGVSVDVVT EAVAHVKVMA ASYVPSESDI PEDSTVEAPL TINIPYSLHR GPQEPSDSYW SSRGMNITFP VFLPKAAEGH NGNGLASSLA PRKRRKKWSA 201: EEDEELIAAV KRHGEGSWAL ISKEEFEGER TASQLSQRWG AIRRRTDTSN TSTQTGLQRT EAQMAANRAL SLAVGNRLPS KKLAVGMTPM LSSGTIKGAQ 301: ANGASSGSTL QGQQQPQPQI QALSRATTSV PVAKSRVPVK KTTGNSTSRA DLMVTANSVA AAACMSGLAT AVTVPKIEPG KNAVSALVPK TEPVKTASTV 401: SMPRPSGISS ALNTEPVKTA VAASLPRSSG IISAPKVEPV KTAASAASLP RPSGMISAPK VEPVKTTASV ASLPRPSGII SAPKAEPVKT AASAASSPRP 501: SGMISAPKVE SVKTTASMPR PSGIISAPKA ELVKSAASAA SLPCTSGIIS SPKAELVKSA ASAASFPRPS SMLSAPKADP VKIVPAAATN TKSVGPLNLR 601: HAVNGSPNHT IPSSPFTKPL HMAPLSKGST IQSNSVPPSF ASSRLVPTQR APAATVVTPQ KPSVVAAATV VTPQKPSVGA AATVVTPQKP SVGAAANVVT 701: PQKPSVGSAA TVVTPQKPSV GAAVTVTSKP VGVQKEQTQG NRASPLVTAT LPPNKTIPAN SVIGTAKAVA AKVETPPSLM PKKNEVVGSC TDKSSLDKPP 801: EKESTTTVSP LAVAATKSKP KDEATVTGTG LKEL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)