suba logo
AT1G58030.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24709150 (2014): plant-type vacuole
  • PMID:15377779 (2004): plant-type vacuole
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cationic amino acid transporter 2
Curator
Summary (TAIR10)
Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Localized to the tonoplast.
Computational
Description (TAIR10)
cationic amino acid transporter 2 (CAT2); FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport, transport, transmembrane transport; LOCATED IN: plant-type vacuole membrane, plasma membrane, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cationic amino acid transporter (InterPro:IPR015606), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease domain (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: cationic amino acid transporter 3 (TAIR:AT5G36940.1); Has 37076 Blast hits to 34712 proteins in 2307 species: Archae - 552; Bacteria - 29543; Metazoa - 2357; Fungi - 2838; Plants - 508; Viruses - 0; Other Eukaryotes - 1278 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0531eggNOG:KOG1286EMBL:AC079604EMBL:AF367304EMBL:BT000457EMBL:BT046174EMBL:CP002684
EnsemblPlants:AT1G58030EnsemblPlants:AT1G58030.1entrez:842170GeneID:842170Genevisible:Q9ASS7GO:GO:0005773GO:GO:0005774
GO:GO:0009705GO:GO:0015179GO:GO:0015297GO:GO:0015807GO:GO:0016021GO:GO:0080144GO:GO:1902475
Gramene:AT1G58030.1hmmpanther:PTHR11785hmmpanther:PTHR11785:SF411HOGENOM:HOG000250623InParanoid:Q9ASS7InterPro:IPR002293InterPro:IPR029485
KEGG:ath:AT1G58030OMA:ARICYAMPANTHER:PTHR11785PaxDb:Q9ASS7Pfam:PF13520Pfam:PF13906Pfam:Q9ASS7
PhylomeDB:Q9ASS7PRIDE:Q9ASS7PRO:PR:Q9ASS7ProteinModelPortal:Q9ASS7Proteomes:UP000006548Reactome:R-ATH-352230RefSeq:NP_849822.1
SMR:Q9ASS7STRING:3702.AT1G58030.1TAIR:AT1G58030tair10-symbols:CAT2TCDB:2.A.3.3.13TMHMM:TMhelixUniGene:At.43759
UniProt:Q9ASS7
Coordinates (TAIR10) chr1:-:21464185..21468141
Molecular Weight (calculated) 67119.40 Da
IEP (calculated) 5.85
GRAVY (calculated) 0.69
Length 635 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFLVDTQKE GGGHSWGYVR SLVRRKQVDS ANGQSHGHQL ARALTVPHLV AIGVGATIGA GVYILVGTVA REHSGPSLAL SFLIAGIAAG LSAFCYAELS
101: SRCPSAGSAY HYSYICVGEG VAWIIGWALI LEYTIGGSAV ARGISPNLAL IFGGEDGLPA ILARHQIPGL DIVVDPCAAI LVFVVTGLLC MGIKESTFAQ
201: GIVTAVNVCV LLFVIVAGSY LGFKTGWPGY ELPTGFFPFG VDGMFAGSAT VFFAFIGFDS VASTAEEVRN PQRDLPIGIG LALLLCCSLY MMVSIVIVGL
301: IPYYAMDPDT PISSAFASHD MQWAVYLITL GAVMALCSAL MGALLPQPRI LMAMARDGLL PSIFSDINKR TQVPVKATVA TGLCAATLAF FMDVSQLAGM
401: VSVGTLLAFT MVAISVLILR YVPPDEQPLP SSLQERIDSV SFICGETTSS GHVGTSDSSH QPLIVNNDAL VDVPLIKNQE ALGCLVLSEE TRRIVAGWSI
501: MFTCVGAFLL SYAASSLSFP GLIRYPLCGV GGCLLLAGLI ALSSIDQDDA RHTFGHSGGY MCPFVPLLPI ICILINMYLL VNLGSATWAR VSVWLLIGVI
601: VYVFYGRKNS SLANAVYVTT AHAEEIYREH EGSLA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)