AT1G57780.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.576 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : heavy-metal-associated domain-containing protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT4G13380.1); Has 459 Blast hits to 412 proteins in 76 species: Archae - 5; Bacteria - 32; Metazoa - 42; Fungi - 8; Plants - 269; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:21403000..21404228 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 30647.70 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.10 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.74 | ||||||||||||||||||||||||||||
| Length | 264 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGCWLKQPQG ITTMMGCWLT KSRENILDNV IVTDAKLKIS MNFEDCAKKI RKVACQFEVK SCITDIDDQK VLVSGDFNLH KLVKTLKKKT GKKIEIVTKN 101: EKSSEDKVDD TVQNEDSKDE IVPQNADKPE TSIMEVEFDI PFLCEKYEKD FGKVISKCTG VETYVVDLEN KKVVVIGNFD KDELSRKLNK KMHQKIKKAE 201: KERQEWESEM MLREAEEEKR LADIYEEIDK DRNVSLNPIT DYEKEMAKHY YMFSDENPNA CSIS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)