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AT1G57670.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.979
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Toll-Interleukin-Resistance (TIR) domain family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Toll-Interleukin-Resistance (TIR) domain family protein; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Toll-Interleukin-Resistance (TIR) domain family protein (TAIR:AT2G03300.1); Has 1636 Blast hits to 1567 proteins in 54 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 0; Plants - 1623; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AC079733EMBL:CP002684EnsemblPlants:AT1G57670EnsemblPlants:AT1G57670.1
entrez:842143Gene3D:3.40.50.10140GeneID:842143GO:GO:0007165
GO:GO:0016021Gramene:AT1G57670.1hmmpanther:PTHR11017hmmpanther:PTHR11017:SF157
HOGENOM:HOG000152577InterPro:IPR000157KEGG:ath:AT1G57670OMA:ALPWLWF
Pfam:PF01582Pfscan:PS50104PhylomeDB:Q9FVT6PIR:A96611
PROSITE:PS50104Proteomes:UP000006548RefSeq:NP_176080.1SMART:SM00255
SMR:Q9FVT6SUPFAM:SSF52200TAIR:AT1G57670TMHMM:TMhelix
UniGene:At.52244UniProt:Q9FVT6
Coordinates (TAIR10) chr1:-:21357169..21359872
Molecular Weight (calculated) 43341.80 Da
IEP (calculated) 6.20
GRAVY (calculated) 0.10
Length 387 amino acids
Sequence (TAIR10)
(BLAST)
001: MAILSRPVNQ VFINFRGKDI RHGFVSHLKD ALKRKNINFF IDTHEQKGRD LNHLFKRIEE ATIALVILSP RYGESKWCLE ELTTIMDQEE KGQMIVIPIF
101: YKVRTEDVEK QTGEFGHMFW SCDEEASLEE MEKWQVALKA VCNKIGLTLD LKRSEAKFIK KVLKAVEEVL TTIQSDEAKE GNCVEDVETF NVPLTLPWSW
201: FSSAVELIGA ILGLLAETVH ADEGRREADF VKKVKTLNVP LALPWLWFGS AVELIGAVVG LLIKAVQSDE RKEDGCVKKV KTFNIALALP WLWFGSAVEL
301: IGSVLGIINT VRSGEGREDD CVKKVKTFYV PLALPWLWFG SAVELVGAVL GLLNEIVHKC ASPTMVILAS QVGSVVAISS RWADKSV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)