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AT1G57630.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Toll-Interleukin-Resistance (TIR) domain family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Toll-Interleukin-Resistance (TIR) domain family protein; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT3G44670.2); Has 1555 Blast hits to 1476 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1555; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:842139EMBL:AC079733EMBL:CP002684EnsemblPlants:AT1G57630EnsemblPlants:AT1G57630.1entrez:842139Gene3D:3.40.50.10140
GeneID:842139GO:GO:0007165GO:GO:0071456Gramene:AT1G57630.1hmmpanther:PTHR11017hmmpanther:PTHR11017:SF20HOGENOM:HOG000015175
InterPro:IPR000157KEGG:ath:AT1G57630OMA:HIIVECKPfam:PF01582Pfscan:PS50104PhylomeDB:Q9FVT9PIR:E96610
PROSITE:PS50104Proteomes:UP000006548RefSeq:NP_176076.1SMART:SM00255SMR:Q9FVT9STRING:3702.AT1G57630.1SUPFAM:SSF52200
TAIR:AT1G57630UniGene:At.66045UniProt:Q9FVT9
Coordinates (TAIR10) chr1:+:21345639..21346157
Molecular Weight (calculated) 19413.20 Da
IEP (calculated) 8.06
GRAVY (calculated) -0.17
Length 172 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSSSLSLS FPSSSLSRTW DYDVFPSFHG EDVRKAFLSQ ILKKEFGRKA INFFVDHEME RGEFIGPVLK QAIKGSKIAL VLLSKNYASS WCCLDELVEI
101: MKKESGQTVI TIFYEVDPNE VKKQTGDFGK AFKETCQGKT EEKVQTWRKA LEGVGLATIA GFHSSNWFVF FI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)