AT1G57590.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Pectinacetylesterase family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Pectinacetylesterase family protein; CONTAINS InterPro DOMAIN/s: Pectinacetylesterase (InterPro:IPR004963); BEST Arabidopsis thaliana protein match is: Pectinacetylesterase family protein (TAIR:AT5G26670.1); Has 541 Blast hits to 533 proteins in 91 species: Archae - 0; Bacteria - 38; Metazoa - 118; Fungi - 0; Plants - 298; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:21327458..21329707 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49917.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.63 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||
| Length | 444 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLLSHSRSPY KPRYVIKSKT SMIKKCKMKK LLWSWIILFN IHVNGMMMEF DEMEWFTVFN GTKVFQTQND VFSEAKFPMV GLTLIQSAAA KGAVCLDGSL 101: PGYHLHRGFG SGANNWLVQL EGGGWCDTIR NCVYRKTTRR GSSSYMEKEI PFTGILSDKA ADNPDFYNWN RVKVRYCDGG SFSGDSENKA AQLQFRGKRI 201: WLAAMEDLMA KGMRQAKQAL LSGCSAGGLA VILRCDDFGK LFPPSTRVKC LSDAGFFLDA IDVSGGRSLR RLYAGVVRLQ NLQTNLPQYC VNRLNPTSCF 301: FPQNLINQVK TPLFILNAAY DSWQIQESLA PKSADPSGSW NDCRLNYAKC SASQIQFLQG FRTRMVNLVK GFAMPSKNGV FLNSCFAHCQ TERHDTWFAQ 401: NSPAIKNKGI AVAVGDWYFE RGGAKLIDCA YPCDKTCHNL VFRR |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)