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AT1G57590.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectinacetylesterase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectinacetylesterase family protein; CONTAINS InterPro DOMAIN/s: Pectinacetylesterase (InterPro:IPR004963); BEST Arabidopsis thaliana protein match is: Pectinacetylesterase family protein (TAIR:AT5G26670.1); Has 541 Blast hits to 533 proteins in 91 species: Archae - 0; Bacteria - 38; Metazoa - 118; Fungi - 0; Plants - 298; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).
Protein Annotations
EC:3.1.1.-eggNOG:ENOG410XQKDeggNOG:KOG4287EMBL:AC079733EMBL:AY123981EMBL:CP002684EnsemblPlants:AT1G57590
EnsemblPlants:AT1G57590.1entrez:842135ESTHER:arath-pae2GeneID:842135Genevisible:F4I839GO:GO:0005576GO:GO:0005618
GO:GO:0016787GO:GO:0071555Gramene:AT1G57590.1hmmpanther:PTHR21562hmmpanther:PTHR21562:SF5HOGENOM:HOG000238558InParanoid:F4I839
InterPro:IPR004963KEGG:ath:AT1G57590OMA:CQTERHDPANTHER:PTHR21562PaxDb:F4I839Pfam:F4I839Pfam:PF03283
PIR:A96610PRIDE:F4I839PRO:PR:F4I839ProteinModelPortal:F4I839Proteomes:UP000006548RefSeq:NP_176072.3SMR:F4I839
STRING:3702.AT1G57590.1TAIR:AT1G57590TMHMM:TMhelixUniGene:At.37001UniProt:F4I839
Coordinates (TAIR10) chr1:-:21327458..21329707
Molecular Weight (calculated) 49917.20 Da
IEP (calculated) 9.63
GRAVY (calculated) -0.23
Length 444 amino acids
Sequence (TAIR10)
(BLAST)
001: MLLSHSRSPY KPRYVIKSKT SMIKKCKMKK LLWSWIILFN IHVNGMMMEF DEMEWFTVFN GTKVFQTQND VFSEAKFPMV GLTLIQSAAA KGAVCLDGSL
101: PGYHLHRGFG SGANNWLVQL EGGGWCDTIR NCVYRKTTRR GSSSYMEKEI PFTGILSDKA ADNPDFYNWN RVKVRYCDGG SFSGDSENKA AQLQFRGKRI
201: WLAAMEDLMA KGMRQAKQAL LSGCSAGGLA VILRCDDFGK LFPPSTRVKC LSDAGFFLDA IDVSGGRSLR RLYAGVVRLQ NLQTNLPQYC VNRLNPTSCF
301: FPQNLINQVK TPLFILNAAY DSWQIQESLA PKSADPSGSW NDCRLNYAKC SASQIQFLQG FRTRMVNLVK GFAMPSKNGV FLNSCFAHCQ TERHDTWFAQ
401: NSPAIKNKGI AVAVGDWYFE RGGAKLIDCA YPCDKTCHNL VFRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)