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AT1G57560.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : myb domain protein 50
Curator
Summary (TAIR10)
Member of the R2R3 factor gene family.
Computational
Description (TAIR10)
myb domain protein 50 (MYB50); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 61 (TAIR:AT1G09540.1); Has 8919 Blast hits to 8236 proteins in 472 species: Archae - 0; Bacteria - 0; Metazoa - 751; Fungi - 484; Plants - 5879; Viruses - 6; Other Eukaryotes - 1799 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AC079733EMBL:AY550304
EMBL:BT029225EMBL:CP002684EnsemblPlants:AT1G57560EnsemblPlants:AT1G57560.1
entrez:842131Gene3D:1.10.10.60GeneID:842131GO:GO:0003677
GO:GO:0003700GO:GO:0006355GO:GO:0009733GO:GO:0009739
GO:GO:0009751GO:GO:0009753Gramene:AT1G57560.1hmmpanther:PTHR10641
hmmpanther:PTHR10641:SF618HOGENOM:HOG000237600InterPro:IPR001005InterPro:IPR009057
InterPro:IPR017930KEGG:ath:AT1G57560KO:K09422OMA:NIAFPWS
Pfam:PF00249Pfscan:PS51294PhylomeDB:Q9C695PIR:E96609
PROSITE:PS51294Proteomes:UP000006548RefSeq:NP_176068.1SMART:SM00717
SMR:Q9C695STRING:3702.AT1G57560.1SUPFAM:SSF46689TAIR:AT1G57560
tair10-symbols:AtMYB50tair10-symbols:MYB50UniGene:At.10907UniProt:Q9C695
Coordinates (TAIR10) chr1:+:21316851..21317959
Molecular Weight (calculated) 35461.50 Da
IEP (calculated) 7.75
GRAVY (calculated) -0.70
Length 314 amino acids
Sequence (TAIR10)
(BLAST)
001: MKRHSCCYKQ KLRKGLWSPE EDEKLLNYIT KHGHGCWSSV PKLAGLERCG KSCRLRWINY LRPDLKRGAF SSEEQNLIVE LHAVLGNRWS QIAARLPGRT
101: DNEIKNLWNS CIKKKLMKKG IDPITHKPLS EVGKETNRSD NNNSTSFSSE TNQDLFVKKT SDFAEYSAFQ KEESNSVSLR NSLSSMIPTQ FNIDDGSVSN
201: AGFDTQVCVK PSIILLPPPN NTSSTVSGQD HVNVSEPNWE SNSGTTSHLN NPGMEEMKWS EEYLNESLFS TQVYVKSETD FNSNIAFPWS QSQACDVFPK
301: DLQRMAFSFG GQTL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)