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AT1G56650.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : production of anthocyanin pigment 1
Curator
Summary (TAIR10)
Encodes a putative MYB domain containing transcription factor involved in anthocyanin metabolism and radical scavenging. Essential for the sucrose-mediated expression of the dihydroflavonol reductase gene.
Computational
Description (TAIR10)
production of anthocyanin pigment 1 (PAP1); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 90 (TAIR:AT1G66390.1); Has 8761 Blast hits to 8206 proteins in 539 species: Archae - 0; Bacteria - 0; Metazoa - 765; Fungi - 472; Plants - 5883; Viruses - 3; Other Eukaryotes - 1638 (source: NCBI BLink).
Protein Annotations
BioGrid:27345eggNOG:COG5147eggNOG:KOG0048EMBL:AC009323EMBL:AF062908EMBL:AF325123EMBL:AK221639
EMBL:AY519563EMBL:CP002684EMBL:DQ222404EMBL:DQ222405EMBL:DQ222406EnsemblPlants:AT1G56650EnsemblPlants:AT1G56650.1
entrez:842120Gene3D:1.10.10.60GeneID:842120Genevisible:Q9FE25GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0009651GO:GO:0009718GO:GO:0009723GO:GO:0009733GO:GO:0009745GO:GO:0009753
GO:GO:0019430GO:GO:0031540GO:GO:0050832Gramene:AT1G56650.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF526HOGENOM:HOG000237600
InParanoid:Q9FE25IntAct:Q9FE25InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT1G56650KO:K16166
OMA:NVCDNSIPaxDb:Q9FE25Pfam:PF00249Pfam:Q9FE25Pfscan:PS51294PhylomeDB:Q9FE25PIR:B96608
PIR:T51680PRIDE:Q9FE25PRO:PR:Q9FE25PROSITE:PS51294ProteinModelPortal:Q9FE25Proteomes:UP000006548RefSeq:NP_176057.1
SMART:SM00717SMR:Q9FE25STRING:3702.AT1G56650.1SUPFAM:SSF46689TAIR:AT1G56650tair10-symbols:ATMYB75tair10-symbols:MYB75
tair10-symbols:PAP1tair10-symbols:SIAA1UniGene:At.20447UniProt:Q9FE25
Coordinates (TAIR10) chr1:-:21233714..21235089
Molecular Weight (calculated) 28471.20 Da
IEP (calculated) 9.44
GRAVY (calculated) -0.71
Length 248 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGSSKGLRK GAWTTEEDSL LRQCINKYGE GKWHQVPVRA GLNRCRKSCR LRWLNYLKPS IKRGKLSSDE VDLLLRLHRL LGNRWSLIAG RLPGRTANDV
101: KNYWNTHLSK KHEPCCKIKM KKRDITPIPT TPALKNNVYK PRPRSFTVNN DCNHLNAPPK VDVNPPCLGL NINNVCDNSI IYNKDKKKDQ LVNNLIDGDN
201: MWLEKFLEES QEVDILVPEA TTTEKGDTLA FDVDQLWSLF DGETVKFD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)