AT1G56500.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : haloacid dehalogenase-like hydrolase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: hydrolase activity, oxidoreductase activity, catalytic activity; INVOLVED IN: metabolic process, cell redox homeostasis; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehydrogenase/epoxide hydrolase (InterPro:IPR005833), Low-density lipoprotein receptor, class B (YWTD) repeat (InterPro:IPR000033), Thioredoxin fold (InterPro:IPR012335), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Thioredoxin-like (InterPro:IPR017936), NHL repeat (InterPro:IPR001258), Thioredoxin-like fold (InterPro:IPR012336), Redoxin (InterPro:IPR013740), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT3G07060.1); Has 23445 Blast hits to 20574 proteins in 2565 species: Archae - 340; Bacteria - 17044; Metazoa - 1036; Fungi - 332; Plants - 721; Viruses - 3; Other Eukaryotes - 3969 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:21159775..21167092 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 114409.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.27 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1055 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MALKLTSPPS VFSQSRRLSS SSLIPIRSKS TFTGFRSRTG VYLSKTTALQ SSTKLSVAAE SPAATIATDD WGKVSAVLFD MDGVLCNSED LSRRAAVDVF 0101: TEMGVEVTVD DFVPFMGTGE AKFLGGVASV KEVKGFDPDA AKERFFEIYL DKYAKPESGI GFPGALELVT ECKNKGLKVA VASSADRIKV DANLKAAGLS 0201: LTMFDAIVSA DAFENLKPAP DIFLAAAKIL GVPTSECVVI EDALAGVQAA QAANMRCIAV KTTLSEAILK DAGPSMIRDD IGNISINDIL TGGSDSTRNS 0301: TAMLEENTVS DKTSANGFQG SRRDILRYGS LGIALSCVYF AATNWKAMQY ASPKALWNAL VGAKSPSFTQ NQGEGRVQQF VDYIADLESK QTATTVPEFP 0401: SKLDWLNTAP LQFRRDLKGK VVILDFWTYC CINCMHVLPD LEFLEKKYKD MPFTVVGVHS AKFDNEKDLD AIRNAVLRYD ISHPVVNDGD MYMWRELGIN 0501: SWPTFAVVSP NGKVIAQIAG EGHRKDLDDV VAAALTYYGG KNVLDSTPLP TRLEKDNDPR LATSPLKFPG KLAIDTLNNR LFISDSNHNR IIVTDLEGNF 0601: IVQIGSSGEE GFQDGSFEDA AFNRPQGLAY NAKKNLLYVA DTENHALREI DFVNERVQTL AGNGTKGSDY QGGRKGTKQL LNSPWDVCFE PVNEKVYIAM 0701: AGQHQIWEYS VLDGITRVFS GNGYERNLNG STPQTTSFAQ PSGISLGPDL KEAYIADSES SSIRALDLQT GGSRLLAGGD PYFSENLFKF GDNDGVGAEV 0801: LLQHPLGVLC ANDGQIYLTD SYNHKIKKLD PVTKRVVTLA GTGKAGFKDG KVKGAQLSEP AGLAITENGR LFVADTNNSL IRYIDLNKGE DSEILTLELK 0901: GVQPPTPKAK SLKRLRKRAS ADTKIVKVDS VTSREGDLNL KISLPDGYHF SKEARSKFVV DVEPENAVAI DPTEGTLSPE GSTMLHFIQS STSASVGKIS 1001: CKVYYCKEDE VCLYQSVQFE VPFKVESELS ASPTITFTVT PRAPDAGGLQ LQGTR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)