suba logo
AT1G56330.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
endoplasmic reticulum 0.500
cytosol 0.500
ASURE: cytosol,endoplasmic reticulum
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : secretion-associated RAS 1B
Curator
Summary (TAIR10)
Encodes a small GTP-binding protein implicated in ER to cis-Golgi transport of other proteins. A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. The protein is found associated to the ER and free in the cytosol.
Computational
Description (TAIR10)
secretion-associated RAS 1B (SAR1B); FUNCTIONS IN: GTP binding; INVOLVED IN: ER to Golgi vesicle-mediated transport; LOCATED IN: cytosol, peripheral to membrane of membrane fraction, endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Small GTPase SAR1-type (InterPro:IPR006687), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: secretion-associated RAS super family 2 (TAIR:AT4G02080.1); Has 6720 Blast hits to 6718 proteins in 371 species: Archae - 2; Bacteria - 32; Metazoa - 3237; Fungi - 1226; Plants - 1080; Viruses - 0; Other Eukaryotes - 1143 (source: NCBI BLink).
Protein Annotations
BioGrid:27311eggNOG:ENOG410YIKIeggNOG:KOG0077EMBL:AC069159EMBL:AY072220EMBL:AY085815EMBL:AY096599
EMBL:CP002684EMBL:M95795EnsemblPlants:AT1G56330EnsemblPlants:AT1G56330.1entrez:842086Gene3D:3.40.50.300GeneID:842086
Genevisible:Q01474GO:GO:0005525GO:GO:0005783GO:GO:0005794GO:GO:0005829GO:GO:0005886GO:GO:0006886
GO:GO:0006888GO:GO:0019898Gramene:AT1G56330.1hmmpanther:PTHR11711hmmpanther:PTHR11711:SF170HOGENOM:HOG000163690InParanoid:Q01474
IntAct:Q01474InterPro:IPR005225InterPro:IPR006687InterPro:IPR006689InterPro:IPR027417iPTMnet:Q01474KEGG:ath:AT1G56330
KO:K07953OMA:LGLAHKNPaxDb:Q01474Pfam:PF00025Pfam:Q01474Pfscan:PS51422PhylomeDB:Q01474
PIR:S28603PRIDE:Q01474PRINTS:PR00328PRO:PR:Q01474PROSITE:PS51422ProteinModelPortal:Q01474Proteomes:UP000006548
Reactome:R-ATH-204005Reactome:R-ATH-5694530Reactome:R-ATH-983170RefSeq:NP_176029.1SMR:Q01474STRING:3702.AT1G56330.1SUPFAM:SSF52540
TAIR:AT1G56330tair10-symbols:ATSAR1tair10-symbols:ATSAR1Btair10-symbols:ATSARA1Btair10-symbols:SAR1tair10-symbols:SAR1BTIGRfam:TIGR00231
TIGRFAMs:TIGR00231UniGene:At.22325UniProt:Q01474
Coordinates (TAIR10) chr1:-:21086845..21088478
Molecular Weight (calculated) 21987.60 Da
IEP (calculated) 7.07
GRAVY (calculated) -0.12
Length 193 amino acids
Sequence (TAIR10)
(BLAST)
001: MFLFDWFYGI LASLGLWQKE AKILFLGLDN AGKTTLLHML KDERLVQHQP TQHPTSEELS IGKIKFKAFD LGGHQIARRV WKDYYAKVDA VVYLVDAYDK
101: ERFAESKREL DALLSDEALA TVPFLILGNK IDIPYAASED ELRYHLGLTN FTTGKGKVTL GDSGVRPLEV FMCSIVRKMG YGEGFKWLSQ YIN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)