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AT1G56300.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Chaperone DnaJ-domain superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding, response to cyclopentenone; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT1G71000.1); Has 23532 Blast hits to 23527 proteins in 3290 species: Archae - 175; Bacteria - 9754; Metazoa - 3953; Fungi - 2136; Plants - 2298; Viruses - 10; Other Eukaryotes - 5206 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0484eggNOG:KOG0714EMBL:AY128316EMBL:BT006549EMBL:CP002684EnsemblPlants:AT1G56300EnsemblPlants:AT1G56300.1
entrez:842083Gene3D:1.10.287.110GeneID:842083Gramene:AT1G56300.1hmmpanther:PTHR24078HOGENOM:HOG000283406InterPro:IPR001623
InterPro:IPR018253KEGG:ath:AT1G56300ncoils:CoilOMA:PDRYARNPfam:PF00226Pfscan:PS50076PhylomeDB:Q8L7R1
PRINTS:PR00625PROSITE:PS00636PROSITE:PS50076Proteomes:UP000006548RefSeq:NP_564717.1scanprosite:PS00636SMART:SM00271
SMR:Q8L7R1STRING:3702.AT1G56300.1SUPFAM:SSF46565TAIR:AT1G56300UniGene:At.42808UniProt:Q8L7R1
Coordinates (TAIR10) chr1:-:21079022..21080168
Molecular Weight (calculated) 17729.70 Da
IEP (calculated) 5.31
GRAVY (calculated) -0.87
Length 156 amino acids
Sequence (TAIR10)
(BLAST)
001: MACEGGGSNV RSSYYTILGI RKDASVSDIR TAYRKLAMKW HPDRYARNPG VAGEAKRRFQ QIQEAYSVLN DENKRSMYDV GLYDPHEDDD DDFCDFMQEM
101: ISMMNNVKDA GESLEDLQRM FTDMVGGDGV SYDCNNNPKG NKRPRVNISR SSAAMR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)