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AT1G56280.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : drought-induced 19
Curator
Summary (TAIR10)
Encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The increase in transcript level is independent from abscisic acid level. Sequence is not similar to any protein of known function. It appears to be a member of plant-specific gene family. It's phosphorylated by AtCPK11 in a Ca(2+)-dependent manner at Thr105 and Ser107 within the AtDi19 bipartite nuclear localization signal
Computational
Description (TAIR10)
drought-induced 19 (DI19); CONTAINS InterPro DOMAIN/s: Drought induced 19/ RING finger protein 114 (InterPro:IPR008598); BEST Arabidopsis thaliana protein match is: Drought-responsive family protein (TAIR:AT3G05700.1); Has 243 Blast hits to 243 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 238; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:27306DIP:DIP-37941NEMBL:AC069159EMBL:AK221045EMBL:AY045868EMBL:BT020564EMBL:CP002684
EMBL:X78584EnsemblPlants:AT1G56280EnsemblPlants:AT1G56280.1entrez:842081ExpressionAtlas:Q39083GeneID:842081Genevisible:Q39083
GO:GO:0005634Gramene:AT1G56280.1hmmpanther:PTHR31875hmmpanther:PTHR31875:SF0HOGENOM:HOG000238690InParanoid:Q39083IntAct:Q39083
InterPro:IPR008598InterPro:IPR027935InterPro:IPR033347iPTMnet:Q39083KEGG:ath:AT1G56280MINT:MINT-1772343PANTHER:PTHR31875
Pfam:PF05605Pfam:PF14571Pfam:Q39083PhylomeDB:Q39083PIR:E96604PIR:S51478PRIDE:Q39083
PRO:PR:Q39083Proteomes:UP000006548RefSeq:NP_564715.4TAIR:AT1G56280tair10-symbols:ATDI19tair10-symbols:DI19UniGene:At.35
UniProt:C0Z2G6UniProt:Q39083
Coordinates (TAIR10) chr1:-:21073366..21074725
Molecular Weight (calculated) 22621.80 Da
IEP (calculated) 7.82
GRAVY (calculated) -0.56
Length 200 amino acids
Sequence (TAIR10)
(BLAST)
001: MDADSKRFLA TLRSRSEMLM GFEEIDGDDD FQEEFACPFC AESYDIIGLC CHIDDEHTLE SKNAVCPVCS LKVGVDIVAH KRFTMGRKRK SRKSGTNSTL
101: SLLRKELREG DLQRLLGFTS RNGSVASSVT PDPLLSSFIS PTRSQSSPAP RQTKNVSEDK QIERKRQVFI SPVSLKDREE RRHKSEFVQR LLSSAIFDEV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)