AT1G56280.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : drought-induced 19 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The increase in transcript level is independent from abscisic acid level. Sequence is not similar to any protein of known function. It appears to be a member of plant-specific gene family. It's phosphorylated by AtCPK11 in a Ca(2+)-dependent manner at Thr105 and Ser107 within the AtDi19 bipartite nuclear localization signal | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
drought-induced 19 (DI19); CONTAINS InterPro DOMAIN/s: Drought induced 19/ RING finger protein 114 (InterPro:IPR008598); BEST Arabidopsis thaliana protein match is: Drought-responsive family protein (TAIR:AT3G05700.1); Has 243 Blast hits to 243 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 238; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:21073366..21074725 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 22621.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.82 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 200 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDADSKRFLA TLRSRSEMLM GFEEIDGDDD FQEEFACPFC AESYDIIGLC CHIDDEHTLE SKNAVCPVCS LKVGVDIVAH KRFTMGRKRK SRKSGTNSTL 101: SLLRKELREG DLQRLLGFTS RNGSVASSVT PDPLLSSFIS PTRSQSSPAP RQTKNVSEDK QIERKRQVFI SPVSLKDREE RRHKSEFVQR LLSSAIFDEV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)