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AT1G56230.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1399)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1399); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1399 (InterPro:IPR009836); BEST Arabidopsis thaliana protein match is: Protein of unknown function (duplicated DUF1399) (TAIR:AT2G22660.2); Has 151 Blast hits to 142 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 18; Plants - 111; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKATeggNOG:ENOG410XQR4EMBL:AC069159EMBL:AK226650EMBL:CP002684EnsemblPlants:AT1G56230EnsemblPlants:AT1G56230.1
entrez:842076ExpressionAtlas:Q9C7J8GeneID:842076GO:GO:0005886Gramene:AT1G56230.1hmmpanther:PTHR34365hmmpanther:PTHR34365:SF1
InterPro:IPR009836ncoils:CoilOMA:ATMLLNWPfam:PF07173PhylomeDB:Q9C7J8PIR:H96603Proteomes:UP000006548
RefSeq:NP_176019.1TAIR:AT1G56230UniGene:At.42822UniProt:Q9C7J8
Coordinates (TAIR10) chr1:-:21046111..21048959
Molecular Weight (calculated) 86025.70 Da
IEP (calculated) 5.45
GRAVY (calculated) -0.32
Length 752 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLERSEFVD GVAARSLSEI SEVDAVRIGG DIISSARRLI ALLRSVGDCQ WLHHPPVIAE AIRRYDELWM PLISDLTVGL KPPMILPPLD VEWVWFCHCL
101: NPVSYSDYCE RRFSKLIGKP AIYDEENEDY AVLQCEKIWS LRYPLESFEN RADPDSLETV SLVNEDIKSL VKKQMFLWEK FSAPYMSETV YLIAARLRYK
201: GFLLILHKFK DEVSSLIPAS DILLMWLTHQ SYPTVYKDDV DEMLEEMTRK VVQVGEKVEK TEVETTKELW DRYFNQPYEK AGGELSIIAN ESGLSNNTMF
301: YWPVSDMDVN TAYKSIRPRF VLELCIFLRL NPKAEQNESI DRSFLRLRVA RCHRKLQLDK KMTDLSSEAS WQKAWHLYCE FGTLGFILES HCDRSRGICF
401: KSGKPEGMIE FPWNDLLRAH SLASGRFLGK QVSVFASVTP PVQAPYLLRF VPDRVTDDSG AMISDSVQRT NNFRPQEGRW LTRTVLDHAG RECFVIRIRV
501: GKGVFKRGGE VPSPVKSEER ITEVRVGSWS YVEGSIGKAP AKVVGTVTPK EPMEDWEAAW EFSTGDELCI RWDSLGTISE LRLYSRNPGS LVRLLTGRRM
601: QYKGEDEEDD EGFVTVVRST EEDPTEKATA LIDWKHQAVE FLPEEDAVFV LLLSVSILRS VTHKRREDVG KLLVRKRITE ATGERDWGSV IVDASSTNVS
701: SSSSPYVEPW YRNSGKVMAM EEKAQVARYP YPVMSYSNVD GGDNLYKHVI FG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)