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AT1G56200.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : embryo defective 1303
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 1303 (emb1303); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30475.1); Has 62 Blast hits to 62 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J293eggNOG:ENOG410YTH6EMBL:AC069159EMBL:AY070768
EMBL:AY085160EMBL:AY094054EMBL:CP002684EnsemblPlants:AT1G56200
EnsemblPlants:AT1G56200.1entrez:842073ExpressionAtlas:Q9C7J5GeneID:842073
GO:GO:0009507GO:GO:0009658GO:GO:0009793GO:GO:0010027
GO:GO:0016021GO:GO:0090056Gramene:AT1G56200.1hmmpanther:PTHR34938
hmmpanther:PTHR34938:SF1HOGENOM:HOG000015206OMA:ICHSAINPIR:E96603
Proteomes:UP000006548RefSeq:NP_564712.1STRING:3702.AT1G56200.1TAIR:AT1G56200
tair10-symbols:emb1303TMHMM:TMhelixUniGene:At.20256UniProt:Q9C7J5
Coordinates (TAIR10) chr1:+:21030852..21031886
Molecular Weight (calculated) 15988.70 Da
IEP (calculated) 9.83
GRAVY (calculated) -0.51
Length 154 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMAASIIQS SPLSFNSNNA KPRIHSSGSL GGIKSQNRVS PLSAVGLSSG LGSRRKSLLI CHSAINAKCS EGQTQTVTRE SPTITQAPVH SKEKSPSLDD
101: GGDGFPPRDD GDGGGGGGGG GNWSGGFFFF GFLAFLGLLK DKEGEEDYRG SRRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)