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AT1G56190.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Phosphoglycerate kinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Phosphoglycerate kinase family protein; FUNCTIONS IN: phosphoglycerate kinase activity; INVOLVED IN: response to cadmium ion, glycolysis; LOCATED IN: thylakoid, mitochondrion, chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate kinase, N-terminal (InterPro:IPR015824), Phosphoglycerate kinase (InterPro:IPR001576), Phosphoglycerate kinase, C-terminal (InterPro:IPR015901), Phosphoglycerate kinase, conserved site (InterPro:IPR015911); BEST Arabidopsis thaliana protein match is: phosphoglycerate kinase 1 (TAIR:AT3G12780.1); Has 10902 Blast hits to 10876 proteins in 3041 species: Archae - 254; Bacteria - 5279; Metazoa - 453; Fungi - 193; Plants - 515; Viruses - 0; Other Eukaryotes - 4208 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G56190-MONOMERBioCyc:ARA:GQT-675-MONOMERBioGrid:27297EC:2.7.2.3eggNOG:COG0126eggNOG:KOG1367EMBL:AC009894
EMBL:AC069159EMBL:AY056291EMBL:AY099598EMBL:BT000250EMBL:CP002684EMBL:U37700EnsemblPlants:AT1G56190
EnsemblPlants:AT1G56190.1entrez:842072ExpressionAtlas:P50318Gene3D:3.40.50.1260Gene3D:3.40.50.1270GeneID:842072Genevisible:P50318
GO:GO:0004618GO:GO:0005524GO:GO:0005739GO:GO:0006096GO:GO:0009507GO:GO:0009570GO:GO:0009579
GO:GO:0016020GO:GO:0019253GO:GO:0046686gramene_pathway:2.7.2.3gramene_pathway:CALVIN-PWYgramene_pathway:GLYCOLYSISgramene_pathway:PWY-1042
gramene_pathway:PWYQT-4428HAMAP:MF_00145hmmpanther:PTHR11406hmmpanther:PTHR11406:SF8HOGENOM:HOG000227107InParanoid:P50318InterPro:IPR001576
InterPro:IPR015824InterPro:IPR015901InterPro:IPR015911iPTMnet:P50318KEGG:00010+2.7.2.3KEGG:00710+2.7.2.3OMA:RFDRHAE
PANTHER:PTHR11406PaxDb:P50318Pfam:P50318Pfam:PF00162PIR:D96603PIR:S71214PIRSF:PIRSF000724
PRIDE:P50318PRINTS:PR00477PRO:PR:P50318PROSITE:PS00111ProteinModelPortal:P50318Proteomes:UP000006548Reactome:R-ATH-70171
Reactome:R-ATH-70263RefSeq:NP_176015.1scanprosite:PS00111SMR:P50318STRING:3702.AT1G56190.1SUPFAM:SSF53748TAIR:AT1G56190
UniGene:At.11481unipathway:UPA00109UniPathway:UPA00116UniProt:P50318
Coordinates (TAIR10) chr1:+:21028403..21030454
Molecular Weight (calculated) 49941.50 Da
IEP (calculated) 8.63
GRAVY (calculated) 0.19
Length 478 amino acids
Sequence (TAIR10)
(BLAST)
001: MASTAATAAL SIIKSTGGAA VTRSSRASFG HIPSTSVSAR RLGFSAVVDS RFSVHVASKV HSVRGKGARG VITMAKKSVG DLNSVDLKGK KVFVRADLNV
101: PLDDNQNITD DTRIRAAIPT IKFLIENGAK VILSTHLGRP KGVTPKFSLA PLVPRLSELL GIEVVKADDC IGPEVETLVA SLPEGGVLLL ENVRFYKEEE
201: KNEPDFAKKL ASLADLYVND AFGTAHRAHA STEGVTKFLK PSVAGFLLQK ELDYLVGAVS NPKRPFAAIV GGSKVSSKIG VIESLLEKCD ILLLGGGMIF
301: TFYKAQGLSV GSSLVEEDKL ELATTLLAKA KARGVSLLLP TDVVIADKFA PDANSKIVPA SAIPDGWMGL DIGPDSVKTF NEALDTTQTV IWNGPMGVFE
401: FEKFAKGTEA VANKLAELSK KGVTTIIGGG DSVAAVEKVG VAGVMSHIST GGGASLELLE GKVLPGVVAL DEATPVTV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)