suba logo
AT1G56060.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.583
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32210.1); Has 180 Blast hits to 180 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 10; Plants - 170; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JX20eggNOG:ENOG41104DBEMBL:CP002684EnsemblPlants:AT1G56060EnsemblPlants:AT1G56060.1entrez:842057GeneID:842057
Gramene:AT1G56060.1hmmpanther:PTHR31568hmmpanther:PTHR31568:SF17InParanoid:F4I3J1InterPro:IPR028144KEGG:ath:AT1G56060OMA:HEMKQTM
PaxDb:F4I3J1Pfam:PF12734PhylomeDB:F4I3J1Proteomes:UP000006548RefSeq:NP_176002.1STRING:3702.AT1G56060.1TAIR:AT1G56060
UniGene:At.42847UniProt:F4I3J1
Coordinates (TAIR10) chr1:-:20966737..20967133
Molecular Weight (calculated) 7812.56 Da
IEP (calculated) 6.73
GRAVY (calculated) -0.26
Length 71 amino acids
Sequence (TAIR10)
(BLAST)
1: MAQYHQQHEM KQTMAETQYV TAPPPMGYPV MMKDSPQTVQ PPHEGQSKGS GGFLRGCLAA MCCCCVLDCV F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)