suba logo
AT1G56050.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GTP-binding protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GTP-binding protein-related; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF933 (InterPro:IPR013029), TGS-like (InterPro:IPR012676), GTP1/OBG (InterPro:IPR006073), Conserved hypothetical protein CHP00092 (InterPro:IPR004396), GTP-binding protein, HSR1-related (InterPro:IPR002917), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: GTP binding (TAIR:AT1G30580.1); Has 18400 Blast hits to 18396 proteins in 3002 species: Archae - 377; Bacteria - 10244; Metazoa - 785; Fungi - 603; Plants - 304; Viruses - 0; Other Eukaryotes - 6087 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0012eggNOG:KOG1491EMBL:CP002684EnsemblPlants:AT1G56050EnsemblPlants:AT1G56050.1entrez:842056Gene3D:1.10.150.300
Gene3D:3.10.20.30Gene3D:3.40.50.300GeneID:842056GO:GO:0005524GO:GO:0005525GO:GO:0009507GO:GO:0009570
GO:GO:0016887GO:GO:0043022GO:GO:0043023Gramene:AT1G56050.1HAMAP:MF_00944hmmpanther:PTHR23305hmmpanther:PTHR23305:SF12
InParanoid:F4I3J0InterPro:IPR004396InterPro:IPR006073InterPro:IPR012675InterPro:IPR012676InterPro:IPR013029InterPro:IPR023192
InterPro:IPR027417InterPro:IPR031167KEGG:ath:AT1G56050KO:K19788OMA:CTIEPNIPaxDb:F4I3J0Pfam:PF01926
Pfam:PF06071Pfscan:PS51710PRIDE:F4I3J0PRINTS:PR00326PROSITE:PS51710ProteinModelPortal:F4I3J0Proteomes:UP000006548
RefSeq:NP_176001.2SMR:F4I3J0STRING:3702.AT1G56050.1SUPFAM:SSF52540SUPFAM:SSF81271TAIR:AT1G56050TIGRfam:TIGR00092
TIGRFAMs:TIGR00092UniGene:At.49982UniProt:F4I3J0
Coordinates (TAIR10) chr1:+:20963793..20966181
Molecular Weight (calculated) 45631.10 Da
IEP (calculated) 5.78
GRAVY (calculated) -0.01
Length 421 amino acids
Sequence (TAIR10)
(BLAST)
001: MARAACSSVV TAMALLPSKS LLCRNQLLFS GNSKFVGVLT LQKRCFSSKV SMSLKAGIVG LPNVGKSTLF NAVVENGKAQ AANFPFCTIE PNVGIVAVPD
101: SRLQVLSKLS GSQKTVPASI EFVDIAGLVK GASQGEGLGN KFLSHIREVD SILQVVRCFE DNDIIHVNGK VDPKSDIDVI NLELIFCDLD QIGKRIERLK
201: KGKAKDSQSK VKEEAEKSAL ERIQEALLEG KPARSVALSD LEMEVVKHLC LLTMKPMIYV ANVAETDLAE PEKNAYVEEV KGLSSDLQSG HVVVSAQVES
301: ELTELPLEER TEYLNSLGVS ESGLGNLIRA TYSLLGLQTY FTSGEKETRA WTIHAGMTAP QAAGVIHSDF EKGFIRAETV AYEDFVTAGS IAAAREKGLL
401: RSEGKEYIVK EGDVMLFRFN V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)