AT1G56030.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.745 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RING/U-box superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RING/U-box superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, RNA binding; INVOLVED IN: translation, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613); BEST Arabidopsis thaliana protein match is: HEAT/U-box domain-containing protein (TAIR:AT1G56040.1); Has 1736 Blast hits to 1665 proteins in 160 species: Archae - 8; Bacteria - 71; Metazoa - 346; Fungi - 21; Plants - 1033; Viruses - 3; Other Eukaryotes - 254 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:20957098..20958550 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43335.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.14 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||||||||||||||||||
| Length | 371 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVKNSYVLFA RLCVELPPLP SDESHGEITT VERQFLRNCQ MELENLSLKT ELPLVYVDES KYWRFIKTVR VLAEVFNNMK TTRTTRKSII QVLMNPILPS 101: ERSTDAMNLF LSTIEKLADL QFSDEDFNQL FVSSRLDLQL ENKYNDKVEV KLRKEAEDAL ARKIKEVVDL TERLLQVEAL EHKHKAKLQL RTETETAVAI 201: ERDYMRWKAE IFESEFNNQL VLRRESEIAL DKERKELEGI KNLLETCFTG QKNLKSQVIT WKDKYDQGSS IRKEKEVALS TKKLELEIFK QLAGSYKQDA 301: DAMRQERDNA LKTDVMKNPH MAADGFTYEL EAIQKWINTG HRTSPMTNLK LSHFSFFPNR ALRSAIEELG R |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)