AT1G56020.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12970.1); Has 3011 Blast hits to 958 proteins in 192 species: Archae - 0; Bacteria - 193; Metazoa - 479; Fungi - 286; Plants - 158; Viruses - 8; Other Eukaryotes - 1887 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:20952216..20953412 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 43136.30 Da | ||||||||||||||||||||||||
| IEP (calculated) | 10.38 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.68 | ||||||||||||||||||||||||
| Length | 398 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASACVKSAG VSPEKFSSYG WTSPRMSLTR DDNRRSSSVD KQQSDPLPEI QDPVVDFEFC LEDPVTMLSA DELFSDGKLV PLKFSGPKTT TTTTSTTVNT 101: TTTEPRGSPE VLKSCRRLEM EISDLFSPKA PRCTTRWREL LGLKRLVNAK EQEESIKASS SSSSTNPKTS SFKQFLHRGS KSSTAASSPL QKESDISESI 201: SVASSRLSLS SSSSSSHEID DLPRLSLDLD KPSANPFAPS RTHSRNLNQP RIRLAKPRRN HPPSTPSVDG SSSSSACIES RGLTVTADSP RLNASGKIVF 301: HGLERSSSSP GSFTGGPRMK QHHGMPRSYS ANVRITPVLN VPVCSLKSGL FFGQLFSSSS SSSSSSPSPG NKSQLQSNGS KNRINRTRLE PKFEQLEK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)