AT1G56010.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NAC domain containing protein 1 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a transcription factor involved in shoot apical meristem formation and auxin-mediated lateral root formation. The gene is thought not to be involved in stress responses (NaCl, auxins, ethylene). NAC1 (NAC1) | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
NAC domain containing protein 1 (NAC1); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (TAIR:AT3G12977.1); Has 2736 Blast hits to 2731 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2736; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:20946852..20947727 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 28654.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.21 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.54 | ||||||||||||||||||||||||||||||||||||||||
| Length | 257 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MACVGGKDWY FYSQRDRKYA TGLRTNRATA TGYWKATGKD RTILRKGKLV GMRKTLVFYQ GRAPRGRKTD WVMHEFRLQG SHHPPNHSLS SPKEDWVLCR 101: VFHKNTEGVI CRDNMGSCFD ETASASLPPL MDPYINFDQE PSSYLSDDHH YIINEHVPCF SNLSQNQTLN SNLTNSVSEL KIPCKNPNPL FTGGSASATL 201: TGLDSFCSSD QMVLRALLSQ LTKIDGSLGP KESQSYGEGS SESLLTDIGI PSTVWNC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)