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AT1G55960.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.841
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Polyketide cyclase/dehydrase and lipid transport superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Polyketide cyclase/dehydrase and lipid transport superfamily protein; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT3G13062.1); Has 265 Blast hits to 265 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 86; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111HC0eggNOG:KOG2761EMBL:AY059755EMBL:AY122994EMBL:CP002684EnsemblPlants:AT1G55960EnsemblPlants:AT1G55960.1
entrez:842047Gene3D:3.30.530.20GeneID:842047GO:GO:0008289GO:GO:0016021Gramene:AT1G55960.1hmmpanther:PTHR19308
hmmpanther:PTHR19308:SF13HOGENOM:HOG000070979InterPro:IPR002913InterPro:IPR023393KEGG:ath:AT1G55960OMA:YCFTKECPfam:PF01852
Pfscan:PS50848PhylomeDB:Q93YV2PROSITE:PS50848Proteomes:UP000006548RefSeq:NP_564705.1STRING:3702.AT1G55960.1SUPFAM:SSF55961
TAIR:AT1G55960TMHMM:TMhelixUniGene:At.23216UniProt:Q93YV2
Coordinates (TAIR10) chr1:-:20927962..20929825
Molecular Weight (calculated) 45326.40 Da
IEP (calculated) 9.75
GRAVY (calculated) -0.30
Length 403 amino acids
Sequence (TAIR10)
(BLAST)
001: MKSVSTWALS FFSDELSRRA VSDCYLWTTA ISLLLILLLH IFFSTKFRFF TSAPSSSSSS SSSSSPSTES VPANSQSRIS KLVSDEDLKF LIENLEEETN
101: DSTEIWEHVI HKSNDRISYS AKRCKPKDGG GPMKYLSVTV FEGFSAEIVR DFYMDNDYRK LWDKTVVEHE QLQVDSNTGI EIGRTIKKFP LLTSREYVLA
201: WRLWQGKEKK FYCFTKECDH NMVPQQRKYV RVSYFRSGWR IRQVPGRNAC EIKMFHQENA GLNVEMAKLA FSKGIWSYVC KMENALCKYI ATSHRTQGPI
301: LSAVTLMKEV PSELETGTDN VTGSMETSSG EGVLSHVVAA KQKKKMRKPS TKLIAKGLVL VGGAICLSRG PSALGAKVAL AYLLTKLNKR GTSLNQTTQT
401: TTI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)