AT1G55940.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.873 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cytochrome P450, family 708, subfamily A, polypeptide 1 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of CYP708A | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cytochrome P450, family 708, subfamily A, polypeptide 1 (CYP708A1); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, shoot, hypocotyl, root, leaf; EXPRESSED DURING: LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: F-box associated domain, type 3 (InterPro:IPR013187), Cytochrome P450 (InterPro:IPR001128), F-box associated interaction domain (InterPro:IPR017451), Cytochrome P450, E-class, group IV (InterPro:IPR002403), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 708, subfamily A, polypeptide 3 (TAIR:AT1G78490.1); Has 33156 Blast hits to 33083 proteins in 1720 species: Archae - 63; Bacteria - 6821; Metazoa - 10825; Fungi - 5863; Plants - 8109; Viruses - 6; Other Eukaryotes - 1469 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:20922543..20925619 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 75643.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.26 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 655 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPEHWVFVPK PHEVGSWKKV PSDFCPFIPV RRGQCINGVT YYLAWIDMYN SVLVSFDIRS EELTMSQIPR RDDGDGSRKN VSLIEYGGKV TLLDSNHLRD 101: KGMLVLRVLE DAGINKEWSK KTMVLHPYQL HLVQVDIIFN VNDIMKEMWG VALSFVIALV VVKISLWLYR WANPNCSGKL PPGSMGFPVI GETVEFFKPY 201: SFNEIHPFVK KRMFKHGGSL FRTNILGSKT IVSTDPEVNF EILKQENRCF IMSYPEALVR IFGKDNLFFK QGKDFHRYMR HIALQLLGPE CLKQRFIQQI 301: DIATSEHLKS VSFQGVVDVK DTSGRLILEQ MILMIISNIK PETKSKLIES FRDFSFDLVR SPFDPSFWNA LYNGLMDFVW LLNILDPLFY VKARSNVMKM 401: LKRMFKERRE EATSDDSKYG DFMETMIYEV EKEGDTINEE RSVELILSLL IASYETTSTM TALTVKFIAE NPKVLMELKR EHETILQNRA DKESGVTWKE 501: YRSMMNFTHM VINESLRLGS LSPAMFRKAV NDVEIKGYTI PAGWIVLVVP SLLHYDPQIY EQPCEFNPWR WEGKELLSGS KTFMAFGGGA RLCAGAEFAR 601: LQMAIFLHHL VTTYDFSLID KSYIIRAPLL RFSKPIRITI SENPLSSSHQ NANLF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)