AT1G55915.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc ion binding | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: WLM (InterPro:IPR013536), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35690.1); Has 560 Blast hits to 511 proteins in 165 species: Archae - 0; Bacteria - 0; Metazoa - 147; Fungi - 231; Plants - 86; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:20907663..20909429 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44973.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.86 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.62 | ||||||||||||||||||||||||||||||||||||
| Length | 404 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSANLEDLN KVWEIKALKR KPREDEARKI LEKVANQVQP IMTRRKWRVK LLSEFCPTNP RLLGVNVNRG VQVKLRLRRV NHDLDFLSYH EILDTMLHEL 101: CHNAHGPHNA SFYKLWDELR KECEELMSKG ITGTGQGFDM PGKRLGGLSR QPSLSFLRAT AATAAEKRVR AGTLLPSGPQ RLGGDSSIMS DLSPIQAAAM 201: AAERRLLDDI WCGSQSTDAL EDEENDSDTY KEPVSIRETC TSVNGKSVKR CNSWSNAHSC PPSSSHQQGS DVIDLTEESF EIRCTKRNRS PGDQGPSCAK 301: DVPNAGVMKS SIPLPSTSYN ANQSREESTM WECAECTLLN PSLAPICELC TAAKPKEREM KHKVWSCKFC TLENEVKLEK CEACGQWRYS YGAPLSTGAP 401: NVGT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)