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AT1G55890.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G13160.1); Has 41765 Blast hits to 13385 proteins in 277 species: Archae - 5; Bacteria - 48; Metazoa - 331; Fungi - 377; Plants - 39933; Viruses - 0; Other Eukaryotes - 1071 (source: NCBI BLink).
Protein Annotations
BioGrid:27264eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC002304
EMBL:AY074876EMBL:BT015869EMBL:CP002684EnsemblPlants:AT1G55890
EnsemblPlants:AT1G55890.1entrez:842039Gene3D:1.25.40.10GeneID:842039
Genevisible:Q9LG23GO:GO:0005739Gramene:AT1G55890.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF773HOGENOM:HOG000090560IntAct:Q9LG23InterPro:IPR002885
InterPro:IPR011990iPTMnet:Q9LG23KEGG:ath:AT1G55890OMA:ACESERF
PaxDb:Q9LG23Pfam:PF01535Pfam:PF13041Pfam:Q9LG23
Pfscan:PS51375PhylomeDB:Q9LG23PIR:B96600PRIDE:Q9LG23
PRO:PR:Q9LG23PROSITE:PS51375ProteinModelPortal:Q9LG23Proteomes:UP000006548
RefSeq:NP_175985.1SMR:Q9LG23STRING:3702.AT1G55890.1SwissPalm:Q9LG23
TAIR:AT1G55890TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.21348
UniProt:Q9LG23
Coordinates (TAIR10) chr1:+:20901364..20902560
Molecular Weight (calculated) 44996.50 Da
IEP (calculated) 9.17
GRAVY (calculated) -0.30
Length 398 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSLSRVLRG TFNTCPIRRF SSAATVVSEP TAVTAAISPP QKSLTSLVNG ERNPKRIVEK FKKACESERF RTNIAVYDRT VRRLVAAKRL HYVEEILEEQ
101: KKYRDMSKEG FAARIISLYG KAGMFENAQK VFEEMPNRDC KRSVLSFNAL LSAYRLSKKF DVVEELFNEL PGKLSIKPDI VSYNTLIKAL CEKDSLPEAV
201: ALLDEIENKG LKPDIVTFNT LLLSSYLKGQ FELGEEIWAK MVEKNVAIDI RTYNARLLGL ANEAKSKELV NLFGELKASG LKPDVFSFNA MIRGSINEGK
301: MDEAEAWYKE IVKHGYRPDK ATFALLLPAM CKAGDFESAI ELFKETFSKR YLVGQTTLQQ LVDELVKGSK REEAEEIVKI AKTNDFLKLK LNLPSQEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)