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AT1G55840.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.629
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Sec14p-like phosphatidylinositol transfer family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Sec14p-like phosphatidylinositol transfer family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT5G47730.1); Has 2078 Blast hits to 2075 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 668; Fungi - 421; Plants - 777; Viruses - 0; Other Eukaryotes - 212 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRSQeggNOG:KOG1471EMBL:AF419577EMBL:AY079108
EMBL:CP002684EnsemblPlants:AT1G55840EnsemblPlants:AT1G55840.1entrez:842034
ExpressionAtlas:Q8W580Gene3D:3.40.525.10GeneID:842034Gramene:AT1G55840.1
hmmpanther:PTHR23324hmmpanther:PTHR23324:SF80InterPro:IPR001251InterPro:IPR011074
ncoils:CoilOMA:GRHISTCPfam:PF00650Pfam:PF03765
Pfscan:PS50191PhylomeDB:Q8W580PROSITE:PS50191Proteomes:UP000006548
RefSeq:NP_175980.1SMART:SM00516SMART:SM01100SMR:Q8W580
STRING:3702.AT1G55840.1SUPFAM:SSF46938SUPFAM:SSF52087TAIR:AT1G55840
UniGene:At.15092UniProt:Q8W580
Coordinates (TAIR10) chr1:+:20873891..20876018
Molecular Weight (calculated) 37002.60 Da
IEP (calculated) 8.26
GRAVY (calculated) -0.45
Length 325 amino acids
Sequence (TAIR10)
(BLAST)
001: MSITNEEAVK QLRALMEDVD DSLRESYRNI HQGYPTENLL RFLKARDGNV QKAHKMLLEC LEWRTQNEID KILTKPIVPV DLYRGIRDTQ LVGVSGYSKE
101: GLPVIAIGVG LSTYDKASVH YYVQSHIQMN EYRDRVVLPS ASKKQGRPIC TCLKILDMSG LKLSALSQIK LMTAITTIDD LNYPEKTETY YVVNVPYIFS
201: ACWKTIKPLL QERTKKKIQV LKGCGKDELL KIMDYESLPH FCRREGSGSG RHISNGTVDN CFSLDHSFHQ DLYDYVKQQA LVKGSGAPIR HGSVHVKFPE
301: PDTEGNKIFD TLENEFQKLG NDQKI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)