AT1G55700.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, C2H2-type (InterPro:IPR007087), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G42280.1); Has 1717 Blast hits to 704 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 107; Fungi - 0; Plants - 1600; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:20821601..20823640 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 77834.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.90 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||||||
| Length | 679 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEEITLKLSS RAILVCRQSD PSQSTHLLSR RYGGQRMSKC LICRTKKHHR TKYHLHCDTC DYDIHKSCYL LPRCRSMPLT RPHTLREGND YHSSCDTCGD 101: EVSENDRSYH CPTCEMCYHK VCNLYPHEIR HPFHAQHPLK LTFSSDSSFT DLKELPASWQ EEPSDSETED SDASDDVSSD SSISDDVSSD SSISDLKCKC 201: CQTNLQEVYY HCSICKFNLN LTCARNPPLS TISHLKSHEH PLSIFPRRIP LPCDACGLSL ENTNDYVYAC LSCNLMVHMA CIFLPRVIKI TRHQHRLSLS 301: PSLPSGIYPC GVCRLTIDVT YGQFSCNRGC HYAVHSKCAI EERIWDGKDL DGVPEEPDED VEPFERIDDK TIQHFSHEHY LRLNIRNGVF DADSFCQACI 401: IPILESESFY GCTQCSFLLH EACASFPRKK DHPLHKHRLI LHPIPPKPLE VHMRMMGGKL YSRNVKGMFN CSGCDQLGFG FMYICSEKGC RFQLDARCAS 501: LPDPFIHGSH SHELFFNLTK GECMGCESSH CSPYSLECME CKSFLGLKCA TLPSMTHYKH DKHPLALCYG EEDTTNAQYW CDICEAKLDA EEWFYTCNDY 601: CNVTVHVSCL LGNPIFLKPT SFYIKQKRST VSVIRNNDNT RAICYRCDRR STQPFFFRYS DLVSSCSFNC LWDRVLKII |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)