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AT1G55620.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 1.000
ASURE: golgi
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : chloride channel F
Curator
Summary (TAIR10)
Encodes a chloride channel protein that has been localized to the chloroplast and golgi apparatus. Complements yeast gef1 mutant and therefor may function to acidify the golgi lumen.
Computational
Description (TAIR10)
chloride channel F (CLC-F); FUNCTIONS IN: ion channel activity, voltage-gated chloride channel activity; INVOLVED IN: chloride transport, transmembrane transport; LOCATED IN: Golgi apparatus, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chloride channel, core (InterPro:IPR014743), Chloride channel, voltage gated (InterPro:IPR001807), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: chloride channel E (TAIR:AT4G35440.2); Has 8610 Blast hits to 8392 proteins in 1951 species: Archae - 280; Bacteria - 6051; Metazoa - 795; Fungi - 382; Plants - 225; Viruses - 0; Other Eukaryotes - 877 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT1G55620EnsemblPlants:AT1G55620.1entrez:842011hmmpanther:PTHR11689hmmpanther:PTHR11689:SF77Pfam:PF00571Pfam:PF00654
Pfscan:PS51371SUPFAM:SSF54631tair10-symbols:ATCLC-Ftair10-symbols:CLC-Ftair10-symbols:CLCFTMHMM:TMhelix
Coordinates (TAIR10) chr1:-:20787338..20790313
Molecular Weight (calculated) 62551.90 Da
IEP (calculated) 8.33
GRAVY (calculated) 0.15
Length 585 amino acids
Sequence (TAIR10)
(BLAST)
001: MMHGLLEILD QIRQSNSSQR QGLDFLAGIY PVIKAIQAAV TLGTGCSLGP EGPSVDIGKS CANGFALMME NNRERRIALT AAGAASGIAS GFNAAVAGCF
101: FAIETVLRPL RAENSPPFTT AMIILASVIS STVSNALLGT QSAFTVPSYD LKSAAELPLY LILGMLCGAV SVVFSRLVTW FTKSFDFIKD KFGLPAIVCP
201: ALGGLGAGII ALKYPGILYW GFTNVEEILH TGKSASAPGI WLLAQLAAAK VVATALCKGS GLVGGLYAPS LMIGAAVGAV FGGSAAEIIN RAIPGNAAVA
301: QPQAYALVGM AATLASMCSV PLTSVLLLFE LTKDYRILLP LMGAVGLAIW VPSVANQGKE SDSSEGRSTG RGYSSLSPSE RKTEGVWRHT DNADSLELTV
401: IENPDHNSFL DEETILEDLK VMRVMSKNYV KVSSGTTLRE ARNILKESHQ NCIMVVDDDD FLAGILTHGD IRRYLSNNAS TILDENTCPV SSVCTKKISY
501: RGQERGLLTC YPDATVGVAK ELMEARGVKQ LPVVKRGEVI HKGKRRKLLG LLHYDSIWTF LRDEMSRRRS INDRRKDKEV GTNGH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)