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AT1G55580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : GRAS family transcription factor
Curator
Summary (TAIR10)
Encodes a member of the GRAS family of putative transcriptional regulators. It is involved in the initiation of axillary meristems during both the vegetative and reproductive growth phases and functions upstream of REV and AXR1 in the regulation of shoot branching.
Computational
Description (TAIR10)
Lateral Suppressor (LAS); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: secondary shoot formation, regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: RGA-like 2 (TAIR:AT3G03450.1); Has 2438 Blast hits to 2402 proteins in 286 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 4; Plants - 2430; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHD7eggNOG:ENOG410YAHSEMBL:AC002328EMBL:AY196482
EMBL:BT026519EMBL:CP002684EMBL:EF598379EMBL:EF598380
EMBL:EF598381EMBL:EF598382EMBL:EF598383EMBL:EF598384
EMBL:EF598385EMBL:EF598386EMBL:EF598387EMBL:EF598388
EMBL:EF598389EMBL:EF598390EMBL:EF598391EMBL:EF598392
EMBL:EF598393EMBL:EF598394EMBL:EF598395EMBL:EF598396
EMBL:EF598397EMBL:EF598398EMBL:EF598399EMBL:EF598400
EMBL:EF598401EMBL:EF598402EnsemblPlants:AT1G55580EnsemblPlants:AT1G55580.1
entrez:842007GeneID:842007Genevisible:Q9ZWC5GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0010223
Gramene:AT1G55580.1hmmpanther:PTHR31636hmmpanther:PTHR31636:SF2HOGENOM:HOG000238577
InParanoid:Q9ZWC5InterPro:IPR005202InterPro:IPR030017KEGG:ath:AT1G55580
OMA:FGDSTERPANTHER:PTHR31636:SF2PaxDb:Q9ZWC5Pfam:PF03514
Pfam:Q9ZWC5Pfscan:PS50985PhylomeDB:Q9ZWC5PRIDE:Q9ZWC5
PRO:PR:Q9ZWC5PROSITE:PS50985ProteinModelPortal:Q9ZWC5Proteomes:UP000006548
RefSeq:NP_175954.1STRING:3702.AT1G55580.1TAIR:AT1G55580tair10-symbols:LAS
tair10-symbols:SCL18UniGene:At.45199UniProt:Q9ZWC5
Coordinates (TAIR10) chr1:+:20764106..20765443
Molecular Weight (calculated) 50012.20 Da
IEP (calculated) 6.57
GRAVY (calculated) -0.23
Length 445 amino acids
Sequence (TAIR10)
(BLAST)
001: MLTSFKSSSS SSEDATATTT ENPPPLCIAS SSAATSASHH LRRLLFTAAN FVSQSNFTAA QNLLSILSLN SSPHGDSTER LVHLFTKALS VRINRQQQDQ
101: TAETVATWTT NEMTMSNSTV FTSSVCKEQF LFRTKNNNSD FESCYYLWLN QLTPFIRFGH LTANQAILDA TETNDNGALH ILDLDISQGL QWPPLMQALA
201: ERSSNPSSPP PSLRITGCGR DVTGLNRTGD RLTRFADSLG LQFQFHTLVI VEEDLAGLLL QIRLLALSAV QGETIAVNCV HFLHKIFNDD GDMIGHFLSA
301: IKSLNSRIVT MAEREANHGD HSFLNRFSEA VDHYMAIFDS LEATLPPNSR ERLTLEQRWF GKEILDVVAA EETERKQRHR RFEIWEEMMK RFGFVNVPIG
401: SFALSQAKLL LRLHYPSEGY NLQFLNNSLF LGWQNRPLFS VSSWK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)