AT1G55540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Nuclear pore complex protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
embryo defective 1011 (emb1011); Has 139490 Blast hits to 62156 proteins in 2603 species: Archae - 205; Bacteria - 38902; Metazoa - 46426; Fungi - 17828; Plants - 10200; Viruses - 1892; Other Eukaryotes - 24037 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:20734759..20743049 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 192580.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.23 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.44 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1816 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSRVEIEEDT EGDRISTNDY YFERIGEPIS IKEDDAQYDL ENPPSQPLAI SERHAVLFVA HSSGFFVGRT NDVISASKNS NGNGDKVFIQ DLSLVDVPVG 0101: DVRILSLSAD DSILAVTVAA DIHFFSVDSL LKKDAKPSFS YSPDESGFVK DFRWRRNDKH SYLVLSNTGK LFHGIDNAPP RHVMDAVDAV EWSSKGSYIA 0201: VAQDNSLRIF SSKFNEKRCI ALSFDSWIGD SDEDCFVKVD SIRWVRNNCI LLGCFQLIEG REENYLVQVI RSPDGKISDG STNLVALSFS DLFPCSMDDL 0301: VPVGVGPHLL FSYIDQCKLA VTANRKSIDE HIVLLDWSSG DDKSAVSVVD IDRETFLPRI GLQENNDDNT VMGLCIDRVS IEGTVNVRSG DDELKELQPY 0401: FVLVCLTLEG KLVMFNVASV AGRPASSDTD LASSSDIEDA YTPLIEDDLS KQSSEKHQQL NIAVQNDQKH LNTEKFSTEQ RLPNENIFSK EFESVKSSVS 0501: GDNNKKQEPY AEKPLQVEDA QQSMIPRLSG TSFGQLPMSL GYDTNKFAGF GPALPVSEKL QKDIFAQSNS MHLQANVESK STAAFFGSPG LQNAILQSPQ 0601: NTSSQPWSSG KSVSPPDFVS GPFPSMRDTQ HKQSVQSGTG YVNPPMSIKD KSVQVIETGR VSALSNLSPL LGQNQDTNEG VEKIEPIPSI RASQLSQQVK 0701: SSFEKSASHQ QHKTPLSTGP LRLEHNMSNQ PSNINEMARE MDTLLQSIEG PGGFKDSCAF ILKSNVEELE QGLESLAGKC QTWKSTIHEQ QAEIQHLLDK 0801: TIQVLAKKTY MEGMYKQTAD NQYWQLWNRQ KLNPELEAKR QHIMKLNKDL THQLIELERY FNRLELDRYN EDGGHPVARR GVPNRSAPSR RVQSLHSLHN 0901: TMSSQLAAAE QLSECLSKQM TYLKIDSPVK KNVKQELFET IGIPYDASFS SPDAVKAKNA SSAKNLLLSS IPASINQQSR QRQSSAMKNS DPETARRRRE 1001: SLDRNWAAFE PPKTTVKRML LQEQQKTGMN QQTVLSERLR SANNTQDRSL LHVKDHASPV VSSNKGIMES FQQDTSEAQS TPFKTRPPMP QSNSPFTISP 1101: ISASKPSFNW SGNKSSNTTS YAEESAPSQI KDTRTVSQPG GSSFLPKRPV ASTVLEQTEK KAGEFKFSEA KANAFVETAA GSVQRLSTTS SGSDFESSKG 1201: FGAQFSTMSS GAPASSFSSK SLFGFNSSSS IPGDKFTFPA VTAPLSGTPL DSTSTLFTAS SAPVSSSSQD PVPASIPISS APVPQTFSVT STSTVSATGF 1301: NVPFGKPLTS VKVDLNQAAP STPSPSPGPT AGFTFNLPAL SPSSPEMVSS STGQSSLFPP SAPTSQVSSD QASATSSLTD SSRLFSSTSL SSTPPITPPD 1401: AFQSPQVSTP SSAVPITEPV SEPKKPEAQS SSILSTQSTV DSVANATKTQ NEPLPVKSEI SNPGTTVTPV SSSGFLSGFS SGTQSSLASM AAPSFSWPGS 1501: SQPQQLSSTP APFPASSPTS ASPFGEKKDI VDTQEDEMDE EAPEASQTTE LSMGSFGGFG LGSTPNPGAP KTNPFGGPFG NATTTTSNPF NMTVPSGELF 1601: KPASFNFQNP QPSQPAGFGS FSVTPSQTPA QSGFGQPSQI GGGQQALGSV LGSFGQSRQI GAGLPGATFG SPTGFGGSNP GSGLPNAPAS GGFAAAGSSA 1701: TGGFAAMASA GRGFAGASST PTGGFAALAS GSGGFAGAAP GGGGGGFGGL GSGTGGFGGF APQGSSGGFA GAAGGGGFGG FGGQAQGQAG GGGFSAFGGN 1801: SGATGKPSEL FTQMRK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)