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AT1G55510.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : branched-chain alpha-keto acid decarboxylase E1 beta subunit
Curator
Summary (TAIR10)
branched-chain alpha-keto acid decarboxylase E1 beta
Computational
Description (TAIR10)
branched-chain alpha-keto acid decarboxylase E1 beta subunit (BCDH BETA1); FUNCTIONS IN: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase, C-terminal (InterPro:IPR005476), Transketolase-like, C-terminal (InterPro:IPR015941), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase-like, pyrimidine-binding domain (InterPro:IPR005475); BEST Arabidopsis thaliana protein match is: Transketolase family protein (TAIR:AT3G13450.1); Has 16577 Blast hits to 16568 proteins in 2706 species: Archae - 211; Bacteria - 10745; Metazoa - 523; Fungi - 224; Plants - 389; Viruses - 0; Other Eukaryotes - 4485 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G55510-MONOMEREC:1.2.4.4eggNOG:COG0022eggNOG:KOG0525EMBL:AC005223EMBL:AF061638EMBL:BT024741
EMBL:CP002684EnsemblPlants:AT1G55510EnsemblPlants:AT1G55510.1entrez:841998Gene3D:3.40.50.920Gene3D:3.40.50.970GeneID:841998
Genevisible:Q9SAV3GO:GO:0003863GO:GO:0005759Gramene:AT1G55510.1hmmpanther:PTHR11624hmmpanther:PTHR11624:SF21HOGENOM:HOG000281451
InParanoid:Q9SAV3InterPro:IPR005475InterPro:IPR009014InterPro:IPR029061InterPro:IPR033247InterPro:IPR033248KEGG:ath:AT1G55510
KO:K00167OMA:LAWGAQMPANTHER:PTHR11624PaxDb:Q9SAV3Pfam:PF02779Pfam:PF02780Pfam:Q9SAV3
PhylomeDB:Q9SAV3PIR:D96597PIR:T51835PRIDE:Q9SAV3PRO:PR:Q9SAV3ProteinModelPortal:Q9SAV3Proteomes:UP000006548
Reactome:R-ATH-70895RefSeq:NP_175947.1SMART:SM00861SMR:Q9SAV3STRING:3702.AT1G55510.1SUPFAM:SSF52518SUPFAM:SSF52922
TAIR:AT1G55510tair10-symbols:BCDH BETA1UniGene:At.10830UniGene:At.75413UniProt:Q9SAV3
Coordinates (TAIR10) chr1:+:20723482..20725505
Molecular Weight (calculated) 38736.70 Da
IEP (calculated) 6.70
GRAVY (calculated) -0.02
Length 352 amino acids
Sequence (TAIR10)
(BLAST)
001: MAALLGRSCR KLSFPSLSHG ARRVSTETGK PLNLYSAINQ ALHIALDTDP RSYVFGEDVG FGGVFRCTTG LAERFGKNRV FNTPLCEQGI VGFGIGLAAM
101: GNRAIVEIQF ADYIYPAFDQ IVNEAAKFRY RSGNQFNCGG LTIRAPYGAV GHGGHYHSQS PEAFFCHVPG IKVVIPRSPR EAKGLLLSCI RDPNPVVFFE
201: PKWLYRQAVE EVPEHDYMIP LSEAEVIREG NDITLVGWGA QLTVMEQACL DAEKEGISCE LIDLKTLLPW DKETVEASVK KTGRLLISHE APVTGGFGAE
301: ISATILERCF LKLEAPVSRV CGLDTPFPLV FEPFYMPTKN KILDAIKSTV NY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)