suba logo
AT1G55480.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : protein containing PDZ domain, a K-box domain, and a TPR region
Curator
Summary (TAIR10)
Encodes a member of a novel plant protein family containing a PDZ, a K-box, and a TPR motif. mRNA but not protein levels decrease after wounding. ZKT is phosphorylated at Thr and Ser residues after wounding.
Computational
Description (TAIR10)
protein containing PDZ domain, a K-box domain, and a TPR region (ZKT); FUNCTIONS IN: binding; INVOLVED IN: response to wounding; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), PDZ/DHR/GLGF (InterPro:IPR001478), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: rubredoxin family protein (TAIR:AT5G17170.2); Has 316 Blast hits to 316 proteins in 83 species: Archae - 2; Bacteria - 103; Metazoa - 8; Fungi - 2; Plants - 160; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGIYeggNOG:ENOG410ZEH3EMBL:AB190499EMBL:AY039926EMBL:AY079359EMBL:AY986818EMBL:CP002684
EnsemblPlants:AT1G55480EnsemblPlants:AT1G55480.1entrez:841995Gene3D:1.25.40.10Gene3D:2.30.42.10GeneID:841995GO:GO:0009416
GO:GO:0009507GO:GO:0009534GO:GO:0009535GO:GO:0009570GO:GO:0009575GO:GO:0009579GO:GO:0009611
GO:GO:0009941GO:GO:0015979Gramene:AT1G55480.1hmmpanther:PTHR17130hmmpanther:PTHR17130:SF24InterPro:IPR001478InterPro:IPR011990
InterPro:IPR013026InterPro:IPR019734KEGG:ath:AT1G55480OMA:QPYGLKFPfscan:PS50005Pfscan:PS50106Pfscan:PS50293
PhylomeDB:Q94BS2PROSITE:PS50005PROSITE:PS50106PROSITE:PS50293Proteomes:UP000006548RefSeq:NP_564691.1SMR:Q94BS2
STRING:3702.AT1G55480.1SUPFAM:SSF48452SUPFAM:SSF50156TAIR:AT1G55480tair10-symbols:ZKTUniGene:At.19231UniProt:Q94BS2
Coordinates (TAIR10) chr1:+:20713822..20715351
Molecular Weight (calculated) 37412.00 Da
IEP (calculated) 8.37
GRAVY (calculated) -0.71
Length 335 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLAPSSYPS LYSSPSLPRT QQTKQNPSLI TQSSFISAKS LFLSSNSASL CNTHVAKRRN LALKASETES SAKAEAGGDG EEEEKYETYE IEVEQPYGLK
101: FRKGRDGGTY IDAILPGGSA DKTGKFTVGD RVIATSAVFG TEIWPAAEYG RTMYTIRQRI GPLLMQMEKR NGKAEDTGEL TEKEIIRAER NAGYISSRLR
201: EIQMQNYLKK KEQKAQREKD LREGLQFSKN GKYEEALERF ESVLGSKPTP EEASVASYNV ACCYSKLNQV QAGLSALEEA LKSGYEDFKR IRSDPDLETL
301: RKSKDFDPLL KQFDESFINE SAINAIKSLF GFNKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)