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AT1G55460.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : DNA/RNA-binding protein Kin17, conserved region
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA/RNA-binding protein Kin17, conserved region; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), DNA/RNA-binding protein Kin17, conserved region (InterPro:IPR019447), KOW (InterPro:IPR005824); BEST Arabidopsis thaliana protein match is: DNA/RNA-binding protein Kin17, conserved region (TAIR:AT5G51795.1); Has 1885 Blast hits to 1561 proteins in 251 species: Archae - 4; Bacteria - 25; Metazoa - 715; Fungi - 242; Plants - 160; Viruses - 13; Other Eukaryotes - 726 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRJ7eggNOG:KOG2837EMBL:AC005223EMBL:AF360132
EMBL:AY051011EMBL:CP002684EnsemblPlants:AT1G55460EnsemblPlants:AT1G55460.1
entrez:841993GeneID:841993GO:GO:0003690GO:GO:0005634
GO:GO:0006260GO:GO:0006974Gramene:AT1G55460.1hmmpanther:PTHR12805
HOGENOM:HOG000178663IntAct:Q9ZVU5InterPro:IPR019447KEGG:ath:AT1G55460
KO:K13102ncoils:CoilOMA:CHISSESPfam:PF10357
PhylomeDB:Q9ZVU5PIR:H96596Proteomes:UP000006548RefSeq:NP_564690.1
SMART:SM01253SMR:Q9ZVU5STRING:3702.AT1G55460.1SUPFAM:SSF57667
TAIR:AT1G55460UniGene:At.19003UniProt:Q9ZVU5
Coordinates (TAIR10) chr1:+:20707567..20708802
Molecular Weight (calculated) 47290.50 Da
IEP (calculated) 9.07
GRAVY (calculated) -0.89
Length 411 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKNDFLTPK AIANRIKAKG LQKLRWYCQM CQKQCRDENG FKCHCMSESH QRQMQVFGQN PTRVVDGYSE EFEQTFLDLM RRSHRFSRIA ATVVYNEYIN
101: DRHHVHMNST EWATLTEFIK HLGKTGKCKV EETPKGWFIT YIDRDSETLF KERLKNKRVK SDLAEEEKQE REIQRQIERA AEKLNGGGGE GETSGNDEVV
201: DDGDDERKKD EDLRLKSGVK VGFALGGGVK QVATGKERGE SSKLLFGDEE NDKVERGEKR KRSGDSGRSE KERRSALDEL MKEEEKKKER MNRKDYWLFE
301: GIIVKVMSKA LAEKGYYKQK GVVKKVIDNY VGEIKMLDSK HVLRVDQKEL ETVLPQIGGM VKIVNGAYRG SNARLLGVDT EKFCAKVQIE KGVYDGRVIK
401: SIEYEDICKL A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)