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AT1G55450.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.695
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: response to salt stress; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT3G54150.1); Has 1000 Blast hits to 995 proteins in 384 species: Archae - 6; Bacteria - 568; Metazoa - 69; Fungi - 129; Plants - 164; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
Protein Annotations
DNASU:841992eggNOG:ENOG4111IQHeggNOG:KOG3010EMBL:AC005223EMBL:AY037190EMBL:AY142037EMBL:CP002684
EnsemblPlants:AT1G55450EnsemblPlants:AT1G55450.1entrez:841992ExpressionAtlas:Q9ZVU4Gene3D:3.40.50.150GeneID:841992GO:GO:0008168
Gramene:AT1G55450.1hmmpanther:PTHR10108hmmpanther:PTHR10108:SF725HOGENOM:HOG000028565InterPro:IPR013216InterPro:IPR029063Pfam:PF08241
PhylomeDB:Q9ZVU4PIR:G96596Proteomes:UP000006548RefSeq:NP_564689.1SMR:Q9ZVU4STRING:3702.AT1G55450.2SUPFAM:SSF53335
TAIR:AT1G55450UniGene:At.20564UniProt:Q9ZVU4
Coordinates (TAIR10) chr1:-:20705274..20706825
Molecular Weight (calculated) 34477.20 Da
IEP (calculated) 7.32
GRAVY (calculated) -0.16
Length 311 amino acids
Sequence (TAIR10)
(BLAST)
001: MAALSDKLAD AYQNARPRYP IDWFTKLAAR TGQHKSAWDV GTGNGQAAIG LAEYFEKVTA TDINEAQLKR AVKHERISYH HTPTTMSEDQ MVALVGGDNS
101: VDLIVAAQAV HYFDLAPFYN VAKRVLRKEG GLIAVFVYND IIISPEVDSI MKRLVDSTFP FRTPVMNLAF DGYKTLPFPF ESIGMGSEGK PIMLDIPHKL
201: SLKGFIGFLR SWQPAMKAKE RGVELVTEDL ISKFEDAWGD DDDVKDIFYK AHMIVGKLSA SDIERHRKRF DTNCVVTTLK DHNNSAVIAS VTAAAFAGVA
301: AYCAYSARKN S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)