AT1G55360.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of Unknown Function (DUF239) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of Unknown Function (DUF239); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT3G13510.1); Has 753 Blast hits to 700 proteins in 28 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 10; Plants - 728; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:20666526..20668502 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47312.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.35 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||||||||||
| Length | 422 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGGVVHLSTA KLARGFLVCL CLWGFFSLSY AARSGVSKQK FEVKKHLNRL NKPAVKSIQS SDGDVIDCVP ISKQPAFDHP FLKDHKIQMK PNYHPEGLFD 101: DNKVSAPKSN EKEGHIPQLW HRYGKCSEGT IPMRRTKEDD VLRASSVKRY GKKKRRSVPL PKSAEPDLIN QSGHQHAIAY VEGDKYYGAK ATINVWEPKI 201: QQQNEFSLSQ IWLLGGSFGQ DLNSIEAGWQ VSPDLYGDNN TRLFTYWTSD AYQATGCYNL LCSGFIQINS DIAMGASISP VSGYRNSQYD ISILIWKDPK 301: EGHWWMQFGN GYVLGYWPSF LFSYLTESAS MIEWGGEVVN SQSDGQHTST QMGSGKFPEE GFSKASYFRN IQVVDGSNNL KAPKGLGTFT EQSNCYDVQT 401: GSNDDWGHYF YYGGPGKNQK CP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)