suba logo
AT1G55360.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 0.941
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of Unknown Function (DUF239)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of Unknown Function (DUF239); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT3G13510.1); Has 753 Blast hits to 700 proteins in 28 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 10; Plants - 728; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKC2eggNOG:ENOG410Z0AYEMBL:AC027034EMBL:AF083681EMBL:BT020490EMBL:BT026483EMBL:CP002684
EnsemblPlants:AT1G55360EnsemblPlants:AT1G55360.1entrez:841982GeneID:841982Gramene:AT1G55360.1hmmpanther:PTHR31589hmmpanther:PTHR31589:SF24
InterPro:IPR004314InterPro:IPR025521KEGG:ath:AT1G55360OMA:ARGFLVCPfam:PF03080Pfam:PF14365PhylomeDB:Q9C8A7
PIR:H96595Proteomes:UP000006548RefSeq:NP_175933.1STRING:3702.AT1G55360.1TAIR:AT1G55360TMHMM:TMhelixUniGene:At.21588
UniGene:At.67812UniProt:Q9C8A7
Coordinates (TAIR10) chr1:-:20666526..20668502
Molecular Weight (calculated) 47312.50 Da
IEP (calculated) 8.35
GRAVY (calculated) -0.57
Length 422 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGVVHLSTA KLARGFLVCL CLWGFFSLSY AARSGVSKQK FEVKKHLNRL NKPAVKSIQS SDGDVIDCVP ISKQPAFDHP FLKDHKIQMK PNYHPEGLFD
101: DNKVSAPKSN EKEGHIPQLW HRYGKCSEGT IPMRRTKEDD VLRASSVKRY GKKKRRSVPL PKSAEPDLIN QSGHQHAIAY VEGDKYYGAK ATINVWEPKI
201: QQQNEFSLSQ IWLLGGSFGQ DLNSIEAGWQ VSPDLYGDNN TRLFTYWTSD AYQATGCYNL LCSGFIQINS DIAMGASISP VSGYRNSQYD ISILIWKDPK
301: EGHWWMQFGN GYVLGYWPSF LFSYLTESAS MIEWGGEVVN SQSDGQHTST QMGSGKFPEE GFSKASYFRN IQVVDGSNNL KAPKGLGTFT EQSNCYDVQT
401: GSNDDWGHYF YYGGPGKNQK CP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)