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AT1G55310.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SC35-like splicing factor 33
Curator
Summary (TAIR10)
Encodes a SR spliceosome protein that is localized to nuclear specks, interacts with SR45 and the U1-70K protein of the U1 snRNP, has sequence similar to human SC35 protein.
Computational
Description (TAIR10)
SC35-like splicing factor 33 (SR33); FUNCTIONS IN: protein binding, RNA binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: interchromatin granule, nuclear speck, nucleolus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: SC35-like splicing factor 30A (TAIR:AT3G13570.1); Has 74071 Blast hits to 42895 proteins in 2604 species: Archae - 973; Bacteria - 11117; Metazoa - 35835; Fungi - 6236; Plants - 4620; Viruses - 230; Other Eukaryotes - 15060 (source: NCBI BLink).
Protein Annotations
BioGrid:27201eggNOG:COG0724eggNOG:KOG0118EMBL:AC027034EMBL:AF099940EMBL:AJ293799EMBL:AK318976
EMBL:AY050974EMBL:BT020420EMBL:CP002684EnsemblPlants:AT1G55310EnsemblPlants:AT1G55310.1entrez:841976Gene3D:3.30.70.330
GeneID:841976Genevisible:Q9SEU4GO:GO:0000166GO:GO:0003723GO:GO:0005681GO:GO:0005737GO:GO:0006397
GO:GO:0008380GO:GO:0016607GO:GO:0042802hmmpanther:PTHR23147hmmpanther:PTHR23147:SF6HOGENOM:HOG000276233InParanoid:Q9SEU4
IntAct:Q9SEU4InterPro:IPR000504InterPro:IPR012677iPTMnet:Q9SEU4KEGG:ath:AT1G55310KO:K12900OMA:HHPRSIS
PaxDb:Q9SEU4Pfam:PF00076Pfam:Q9SEU4Pfscan:PS50102PhylomeDB:Q9SEU4PIR:B96595PIR:T50647
PRIDE:Q9SEU4PRO:PR:Q9SEU4PROSITE:PS50102ProteinModelPortal:Q9SEU4Proteomes:UP000006548RefSeq:NP_001031195.4RefSeq:NP_001185236.1
RefSeq:NP_564685.4SMART:SM00360SMR:Q9SEU4STRING:3702.AT1G55310.3SUPFAM:SSF54928TAIR:AT1G55310tair10-symbols:At-SCL33
tair10-symbols:ATSCL33tair10-symbols:SCL33tair10-symbols:SR33UniGene:At.20205UniProt:Q9SEU4
Coordinates (TAIR10) chr1:+:20630676..20632695
Molecular Weight (calculated) 33339.00 Da
IEP (calculated) 12.23
GRAVY (calculated) -1.62
Length 287 amino acids
Sequence (TAIR10)
(BLAST)
001: MRGRSYTPSP PRGYGRRGRS PSPRGRYGGR SRDLPTSLLV RNLRHDCRQE DLRKSFEQFG PVKDIYLPRD YYTGDPRGFG FVQFMDPADA ADAKHHMDGY
101: LLLGRELTVV FAEENRKKPT EMRARERGGG RFRDRRRTPP RYYSRSRSPP PRRGRSRSRS GDYYSPPPRR HHPRSISPRE ERYDGRRSYS RSPASDGSRG
201: RSLTPVRGKS RSLSPSPRRS ISRSPRRSRS PSPKRNRSVS PRRSISRSPR RSRSPRRSRR SYTPEPARSR SQSPHGGQYD EDRSPSQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)