AT1G55280.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Lipase/lipooxygenase, PLAT/LH2 family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
Lipase/lipooxygenase, PLAT/LH2 family protein; CONTAINS InterPro DOMAIN/s: Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976); Has 47 Blast hits to 47 proteins in 18 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:20623099..20624533 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 43303.30 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.98 | ||||||||||||||||||||||||
| GRAVY (calculated) | 0.06 | ||||||||||||||||||||||||
| Length | 390 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATESIFLKP VSFAWFTKNP LNQFHKRRQL SYRIRRFRFG VICSKSSDYQ DFQSYARPLR LLPAEEVKVF RGNPSFTVSE SRSLYKVKLQ TSNLFGSGIS 101: DMNARVLICL IDEKGDSVLQ TIPPNLSSLD PEVVENGESF RFQRGSLDEF SFEGPKLGKI RAFWIGLESG QWRVGRVSLW VVNPRGKETE AKTFCYRYDF 201: EVDELLLGES SDLSMVELRP SRITELADSD QISSSSALNL DRTMVSNEES MEEYANLKLS LLLYDAVLIL LGSLVFSFSL GENSAIAFFF GGTMGFLYLL 301: LLQRSVDELQ VPGSSSSENS NQILSGGLKI PVLSLALAIG LTVLAMRGHI GGEMTAFAVT PKEIVVGTLG FLVCKVAVIL AAFKPLKDGP |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)