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AT1G55265.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Protein of unknown function, DUF538
Curator
Summary (TAIR10)
Computational
Description (TAIR10)		 Protein of unknown function, DUF538; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT5G19860.1); Has 529 Blast hits to 529 proteins in 37 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 0; Plants - 516; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0SZeggNOG:ENOG410YN13EMBL:AY085387EMBL:BT025768
EMBL:CP002684EnsemblPlants:AT1G55265EnsemblPlants:AT1G55265.1entrez:841971
Gene3D:2.30.240.10GeneID:841971GO:GO:0005773Gramene:AT1G55265.1
hmmpanther:PTHR31676hmmpanther:PTHR31676:SF6HOGENOM:HOG000148667InterPro:IPR007493
KEGG:ath:AT1G55265OMA:TAMESDPPfam:PF04398PhylomeDB:Q8LEJ7
Proteomes:UP000006548RefSeq:NP_564683.1SUPFAM:0051283SUPFAM:SSF141562
TAIR:AT1G55265UniGene:At.20050UniGene:At.68274UniProt:Q8LEJ7
Coordinates (TAIR10) chr1:+:20617326..20617853
Molecular Weight (calculated) 19137.80 Da
IEP (calculated) 4.82
GRAVY (calculated) 0.15
Length 175 amino acids
Sequence (TAIR10)
(BLAST) 		001: MASSLLALFS CLFLSLLSLS SSLNLRRPIF SQSNDLDLFS SLNLDRPSLA ADDIHDLLPR YGFPKGLLPN NVKSYTISDD GDFTVDLISS CYVKFSDQLV
101: FYGKNIAGKL SYGSVKDVRG IQAKEAFLWL PITAMESDPS SATVVFSVGF VSKTLPASMF ENVPSCSRNL NLQDS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)