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AT1G55260.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: nucleus, anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT2G44290.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYHKeggNOG:ENOG410YR9FEMBL:CP002684EnsemblPlants:AT1G55260EnsemblPlants:AT1G55260.1entrez:841970ExpressionAtlas:F4I082
GeneID:841970GO:GO:0005634GO:GO:0031225Gramene:AT1G55260.1hmmpanther:PTHR33044hmmpanther:PTHR33044:SF28InParanoid:F4I082
InterPro:IPR016140OMA:REECTNQPaxDb:F4I082Pfam:PF14368PRIDE:F4I082ProteinModelPortal:F4I082Proteomes:UP000006548
RefSeq:NP_564682.2SMART:SM00499SMR:F4I082STRING:3702.AT1G55260.1SUPFAM:SSF47699TAIR:AT1G55260UniGene:At.2370
UniGene:At.25195UniProt:F4I082
Coordinates (TAIR10) chr1:+:20614663..20616158
Molecular Weight (calculated) 25309.30 Da
IEP (calculated) 6.70
GRAVY (calculated) -0.27
Length 227 amino acids
Sequence (TAIR10)
(BLAST)
001: MIPSSNQYVD THRVTEDRAI YIHEHTKRLE DTFLSRENTT HRTMEKSTRT LFITIVITSM LLGFGNSDLA QDREECTNQL IELSTCIPYV GGDAKAPTKD
101: CCAGFGQVIR KSEKCVCILV RDKDDPQLGI KINATLAAHL PSACHITAPN ITDCISILHL PRNSTLAKEF ENLGRIEDNY NSTSPTQIHK DGTGGGKAEP
201: VKSNGWKEKS WLGVELLIYL LVSLIFF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)