suba logo
AT1G55250.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23667806 (2013): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : histone mono-ubiquitination 2
Curator
Summary (TAIR10)
Encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B.
Computational
Description (TAIR10)
histone mono-ubiquitination 2 (HUB2); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: histone mono-ubiquitination 1 (TAIR:AT2G44950.1); Has 74071 Blast hits to 42895 proteins in 2604 species: Archae - 973; Bacteria - 11117; Metazoa - 35835; Fungi - 6236; Plants - 4620; Viruses - 230; Other Eukaryotes - 15060 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1189-MONOMERBioCyc:ARA:GQT-1616-MONOMERBioGrid:27193EC:6.3.2.-eggNOG:ENOG410Y5C6eggNOG:KOG0978EMBL:AC027034
EMBL:AY085755EMBL:BT029207EMBL:CP002684EnsemblPlants:AT1G55250EnsemblPlants:AT1G55250.1entrez:841968ExpressionAtlas:Q9C895
Gene3D:3.30.40.10GeneID:841968Genevisible:Q9C895GO:GO:0005634GO:GO:0008270GO:GO:0009965GO:GO:0010162
GO:GO:0010228GO:GO:0010390GO:GO:0016874GO:GO:0033523GO:GO:0042803GO:GO:0045087hmmpanther:PTHR23163
hmmpanther:PTHR23163:SF0HOGENOM:HOG000006004InParanoid:Q9C895IntAct:Q9C895InterPro:IPR001841InterPro:IPR013083InterPro:IPR017907
iPTMnet:Q9C895KEGG:ath:AT1G55250KO:K10696ncoils:CoilOMA:HAYNTHLPaxDb:Q9C895Pfam:PF13920
Pfam:Q9C895Pfscan:PS50089PhylomeDB:Q9C895PIR:D96594PRIDE:Q9C895PRO:PR:Q9C895PROSITE:PS00518
PROSITE:PS50089ProteinModelPortal:Q9C895Proteomes:UP000006548RefSeq:NP_001154428.1RefSeq:NP_564680.4scanprosite:PS00518SMART:SM00184
SMR:Q9C895STRING:3702.AT1G55250.1SUPFAM:SSF57850TAIR:AT1G55250tair10-symbols:HUB2UniGene:At.37093UniPathway:UPA00143
UniProt:Q9C895
Coordinates (TAIR10) chr1:+:20607214..20612302
Molecular Weight (calculated) 103402.00 Da
IEP (calculated) 4.92
GRAVY (calculated) -0.67
Length 900 amino acids
Sequence (TAIR10)
(BLAST)
001: MENQESDEPM QKKPHLLDSV SPNSMARNSS PSHPIAKSVS FFDCDFSLLC LRLVDYEIDV DATVLQLQNQ KLVQQLDLQK KQLYDVESKI QELQLNQTSY
101: DDELISVNQL WNQLVDDLIL LGVRAGANQE ALNYLDIVDK KRVPPCAADE TFLCRLLQVD SLDTSKSDEV VRKVEEALAL RHSSTMELMG LFENTIDTQK
201: TKAESISQSL HAVKSTEDAT IQLSSINDLM KEESKNLREM IDALHVRHKE HSEQIQAYIS SHSTDQSELK HLKGQLEEIK AELEENRRKL ITLKMQKDAA
301: CEGHVTSPAI ANGSLSPEKP VDKTKLRELK DSIDEIKIMA EGRLSELQAS QEYNLSLSRQ CQDIENELKD DQYIYSSRLY SLINDRIHHW NAELDRYKIL
401: TEAIQAERSF VMRRDKELNL RAESLEAANH KTTTVGSRIE VLEKKLQSCI IEKNGLELET EEAIQDSERQ DIKSEFIAMA STLSKEMEMM EAQLKRWKDT
501: AQDALYLREQ AQSLRVSLSN KADEQKGLED KCAKQMAEIK SLKALIEKLL KEKLQLQNLA SICTRECNDD RGLAEIKDSQ RKAQAQAEEL KNVLDEHFLE
601: LRVKAAHETE SACQERLATA KAEIAELRTQ LDLSEREVLE LKEGIKVKEQ EAEASIAEME TIGQAYEDMQ TQNQHLLQQV AERDDYNIKL VSESVKTKHA
701: YNTHLSEKQV MEKQLHQVNA SVENFKARIA HNEEQMKGCF SEAYKLIQED RHLVISLETT KWEVADADKE FRWLKSAVSS SEKEYEQISR RTDDIKLELD
801: DERREKKKLE EELMELNKEL EELGSESVEA AIVRLQEEVK NCKNILKCGV CFDRPKEVVI VKCYHLFCQQ CIQRSLEIRH RKCPGCGTAF GQNDVRLVKM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)