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AT1G55160.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.500
mitochondrion 0.500
ASURE: mitochondrion,plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24727099 (2014): mitochondrion
  • PMID:22923678 (2012): mitochondrion
  • PMID:21841088 (2011): mitochondrion
  • PMID:16618929 (2006): unclear
  • PMID:15276431 (2004): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19530.1); Has 63 Blast hits to 63 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AC027034EMBL:AC073944EMBL:AF372935EMBL:AY133589EMBL:CP002684EnsemblPlants:AT1G55160EnsemblPlants:AT1G55160.1
entrez:841959ExpressionAtlas:Q9C542GeneID:841959GO:GO:0016021Gramene:AT1G55160.1hmmpanther:PTHR34364hmmpanther:PTHR34364:SF1
HOGENOM:HOG000241627IntAct:Q9C542PhylomeDB:Q9C542PIR:C96593Proteomes:UP000006548RefSeq:NP_564677.1SwissPalm:Q9C542
TAIR:AT1G55160TMHMM:TMhelixUniGene:At.20703UniProt:Q9C542
Coordinates (TAIR10) chr1:+:20578476..20579803
Molecular Weight (calculated) 20829.30 Da
IEP (calculated) 10.48
GRAVY (calculated) -0.53
Length 188 amino acids
Sequence (TAIR10)
(BLAST)
001: MSEETPKLFT NKPKKKAIIA QLKHVEANFN NPTVPPSSKP SPAAAAAASY TMGGGSVPPP PPPKESFARR YKYVWPLLLT VNLAVGGYLF FRTKKKDLDP
101: VVEETAAKSS SVAAPVTVEK TLSSTVVAEP VVIKAREPIP EKQQRELFKW MLEEKRKVNP KNAEEKKRND EEKAILKQFI GSKTIPTF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)