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AT1G55150.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.844
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DEA(D/H)-box RNA helicase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G63120.2); Has 46818 Blast hits to 45969 proteins in 3127 species: Archae - 940; Bacteria - 23848; Metazoa - 6439; Fungi - 4774; Plants - 2718; Viruses - 21; Other Eukaryotes - 8078 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-132-MONOMERBioGrid:27183EC:3.6.4.13eggNOG:COG0513eggNOG:KOG0331EMBL:AC073944EMBL:AJ010470
EMBL:AY062745EMBL:AY128786EMBL:CP002684EnsemblPlants:AT1G55150EnsemblPlants:AT1G55150.1entrez:841958Gene3D:3.40.50.300
GeneID:841958Genevisible:Q9C718GO:GO:0000184GO:GO:0003723GO:GO:0004004GO:GO:0005524GO:GO:0005634
GO:GO:0005829GO:GO:0006364GO:GO:0010501Gramene:AT1G55150.1hmmpanther:PTHR24031hmmpanther:PTHR24031:SF219HOGENOM:HOG000268804
InParanoid:Q9C718InterPro:IPR000629InterPro:IPR001650InterPro:IPR011545InterPro:IPR014001InterPro:IPR014014InterPro:IPR027417
iPTMnet:Q9C718KEGG:ath:AT1G55150KO:K12823MINT:MINT-8068045OMA:KRWNLDEPaxDb:Q9C718Pfam:PF00270
Pfam:PF00271Pfam:Q9C718Pfscan:PS51192Pfscan:PS51194Pfscan:PS51195PhylomeDB:Q9C718PIR:B96593
PIR:T51345PRIDE:Q9C718PRO:PR:Q9C718PROSITE:PS00039PROSITE:PS51192PROSITE:PS51194PROSITE:PS51195
ProteinModelPortal:Q9C718Proteomes:UP000006548RefSeq:NP_175911.1scanprosite:PS00039SMART:SM00487SMART:SM00490SMR:Q9C718
STRING:3702.AT1G55150.1SUPFAM:SSF52540TAIR:AT1G55150UniGene:At.20425UniProt:Q9C718
Coordinates (TAIR10) chr1:+:20574634..20577141
Molecular Weight (calculated) 55579.30 Da
IEP (calculated) 9.52
GRAVY (calculated) -0.49
Length 501 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRYDSRTGD STSYRDRRSD SGFGGTSSYG SSGSHTSSKK DNDGNESPRK LDLDGLTPFE KNFYVESPAV AAMTDTEVEE YRKLREITVE GKDIPKPVKS
101: FRDVGFPDYV LEEVKKAGFT EPTPIQSQGW PMAMKGRDLI GIAETGSGKT LSYLLPAIVH VNAQPMLAHG DGPIVLVLAP TRELAVQIQQ EASKFGSSSK
201: IKTTCIYGGV PKGPQVRDLQ KGVEIVIATP GRLIDMMESN NTNLRRVTYL VLDEADRMLD MGFDPQIRKI VSHIRPDRQT LYWSATWPKE VEQLSKKFLY
301: NPYKVIIGSS DLKANRAIRQ IVDVISESQK YNKLVKLLED IMDGSRILVF LDTKKGCDQI TRQLRMDGWP ALSIHGDKSQ AERDWVLSEF RSGKSPIMTA
401: TDVAARGLDV KDVKYVINYD FPGSLEDYVH RIGRTGRAGA KGTAYTFFTV ANARFAKELT NILQEAGQKV SPELASMGRS TAPPPPGLGG FRDRGSRRGW
501: S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)