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AT1G55000.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.819
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : peptidoglycan-binding LysM domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
peptidoglycan-binding LysM domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392), F-box domain, Skp2-like (InterPro:IPR022364), Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482); Has 156 Blast hits to 156 proteins in 42 species: Archae - 0; Bacteria - 6; Metazoa - 62; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
BioGrid:27167eggNOG:ENOG4112BYVeggNOG:KOG2850EMBL:AC064840EMBL:AC069144EMBL:AF424604EMBL:AK316995
EMBL:AK317053EMBL:AY087755EMBL:AY124829EMBL:CP002684EnsemblPlants:AT1G55000EnsemblPlants:AT1G55000.1EnsemblPlants:AT1G55000.2
EnsemblPlants:AT1G55000.3entrez:841942Gene3D:3.10.350.10GeneID:841942Genevisible:Q9FZ32GO:GO:0016567Gramene:AT1G55000.1
Gramene:AT1G55000.2Gramene:AT1G55000.3hmmpanther:PTHR20932hmmpanther:PTHR20932:SF9HOGENOM:HOG000029585InParanoid:Q9FZ32IntAct:Q9FZ32
InterPro:IPR001810InterPro:IPR018392KEGG:ath:AT1G55000OMA:GTCYIELPaxDb:Q9FZ32Pfam:PF01476Pfam:PF12937
Pfam:Q9FZ32PhylomeDB:Q9FZ32PIR:E96591PRIDE:Q9FZ32PRO:PR:Q9FZ32PROSITE:PS51782ProteinModelPortal:Q9FZ32
Proteomes:UP000006548RefSeq:NP_001031192.1RefSeq:NP_001031193.1RefSeq:NP_564673.1SMART:SM00257SMR:Q9FZ32STRING:3702.AT1G55000.1
SUPFAM:SSF54106SUPFAM:SSF81383TAIR:AT1G55000UniGene:At.16087UniPathway:UPA00143UniProt:Q9FZ32
Coordinates (TAIR10) chr1:+:20514762..20516166
Molecular Weight (calculated) 24904.90 Da
IEP (calculated) 8.46
GRAVY (calculated) -0.17
Length 221 amino acids
Sequence (TAIR10)
(BLAST)
001: MALYCRDTLI IIFQKLTVAD LARASCVCKV WNSVATEDDL VVSAFTAPWR IKELVGRPAS VSFWRDNGIW KFAISHRICR GDSVTSLAVK YAVQVMDIKR
101: LNNMMSDHGI YSRDRLLIPI SNPEILANTT CYVELDKYAK REVAVLYLEG APKREQPVPG TNQQSNLSAD GKRRLIESLR RSMQVDDGTA LYYLAIAEGD
201: PRSALSEFSA DLRWERQAGL N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)