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AT1G54970.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : proline-rich protein 1
Curator
Summary (TAIR10)
encodes a proline-rich protein that is specifically expressed in the root.
Computational
Description (TAIR10)
proline-rich protein 1 (PRP1); CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: proline-rich protein 3 (TAIR:AT3G62680.1); Has 45300 Blast hits to 21383 proteins in 1373 species: Archae - 227; Bacteria - 7064; Metazoa - 17109; Fungi - 5177; Plants - 7680; Viruses - 1757; Other Eukaryotes - 6286 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J5VGeggNOG:ENOG410Y08DEMBL:AC064840EMBL:AC069144EMBL:AF110985EMBL:CP002684EnsemblPlants:AT1G54970
EnsemblPlants:AT1G54970.1entrez:841938GeneID:841938Genevisible:Q9FZ35GO:GO:0005576GO:GO:0005618Gramene:AT1G54970.1
hmmpanther:PTHR33470hmmpanther:PTHR33470:SF1HOGENOM:HOG000152594InParanoid:Q9FZ35KEGG:ath:AT1G54970OMA:ASFAICIPaxDb:Q9FZ35
Pfam:PF01190Pfam:Q9FZ35PhylomeDB:Q9FZ35PIR:B96591PIR:T52078PRIDE:Q9FZ35PRO:PR:Q9FZ35
ProteinModelPortal:Q9FZ35Proteomes:UP000006548RefSeq:NP_175895.1STRING:3702.AT1G54970.1TAIR:AT1G54970tair10-symbols:ATPRP1tair10-symbols:PRP1
tair10-symbols:RHS7UniGene:At.27803UniProt:Q9FZ35
Coordinates (TAIR10) chr1:+:20505000..20506238
Molecular Weight (calculated) 36518.50 Da
IEP (calculated) 10.10
GRAVY (calculated) -0.29
Length 335 amino acids
Sequence (TAIR10)
(BLAST)
001: MAITRASFAI CILLSLATIA TADYYAPSSP PVYTSPVNKP TLPPPVYTPP VHKPTLPPPV YTPPVHKPTL SPPVYTKPTL PPPAYTPPVY NKPTLPAPVY
101: TPPVYKPTLS PPVYTKPTLL PPVFKPTLSP PVYTKPTLSP TVYKPTLSPP VNNKPSLSPP VYKPTLSPPV YTKPTLPPPV YKKSPSYSPP PPFAPKPTYT
201: PPTKPYVPEI IKAVGGIILC KNGYETYPIQ GAKAKIVCSE RGSYEKSKNE VVIYSDPTDF KGYFHVVLTH IKNLSNCRVK LYTSPVETCK NPTNVNKGLT
301: GVPFSMYSDK NLKLFNVGPF YFTAGSKAAP ATPRY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)