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AT1G54870.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G05260.1); Has 123768 Blast hits to 123548 proteins in 3620 species: Archae - 996; Bacteria - 80755; Metazoa - 5748; Fungi - 6562; Plants - 2744; Viruses - 5; Other Eukaryotes - 26958 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G54870-MONOMERBioCyc:MetaCyc:AT1G54870-MONOMERBioGrid:27151EC:1.1.1.-
eggNOG:KOG0725EMBL:AC064840EMBL:AC069144EMBL:AY124852
EnsemblPlants:AT1G54870EnsemblPlants:AT1G54870.1entrez:841926ExpressionAtlas:Q9FZ42
Gene3D:3.40.50.720GeneID:841926Genevisible:Q9FZ42GO:GO:0008106
GO:GO:0016491hmmpanther:PTHR24322hmmpanther:PTHR24322:SF566InParanoid:Q9FZ42
InterPro:IPR016040InterPro:IPR020904KEGG:ath:AT1G54870OMA:GKEHAMN
PANTHER:PTHR24322PaxDb:Q9FZ42Pfam:PF00106Pfam:Q9FZ42
PIR:C96590PRINTS:PR00080PRINTS:PR00081PRO:PR:Q9FZ42
PROSITE:PS00061ProteinModelPortal:Q9FZ42Reactome:R-ATH-5661270RefSeq:NP_564670.2
scanprosite:PS00061SUPFAM:SSF51735TAIR:AT1G54870UniGene:At.16081
UniGene:At.70639UniProt:Q7DLK6UniProt:Q9FZ42
Coordinates (TAIR10) chr1:+:20459011..20460417
Molecular Weight (calculated) 36766.90 Da
IEP (calculated) 8.76
GRAVY (calculated) -0.28
Length 335 amino acids
Sequence (TAIR10)
(BLAST)
001: MNVLCRVFTS SRVLSSNVTF SFSQIPNNTK KPLLEKRRLS PRVCLRAMAS EKQKQHAQPG KEHVMESSPQ FSSSDYQPSN KLRGKVALIT GGDSGIGRAV
101: GYCFASEGAT VAFTYVKGQE EKDAQETLQM LKEVKTSDSK EPIAIPTDLG FDENCKRVVD EVVNAFGRID VLINNAAEQY ESSTIEEIDE PRLERVFRTN
201: IFSYFFLTRH ALKHMKEGSS IINTTSVNAY KGNASLLDYT ATKGAIVAFT RGLALQLAEK GIRVNGVAPG PIWTPLIPAS FNEEKIKNFG SEVPMKRAGQ
301: PIEVAPSYVF LACNHCSSYF TGQVLHPNGG AVVNA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)