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AT1G54780.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : thylakoid lumen 18.3 kDa protein
Curator
Summary (TAIR10)
Encodes a thylakoid lumen protein regulating photosystem II repair cycle.
Computational
Description (TAIR10)
TLP18.3; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosystem II repair; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF477 (InterPro:IPR007621); Has 209 Blast hits to 209 proteins in 92 species: Archae - 0; Bacteria - 130; Metazoa - 2; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
Protein Annotations
BioGrid:27144BRENDA:3.1.3.2eggNOG:COG1512eggNOG:ENOG410IE3SEMBL:AC005388EMBL:AF375432EMBL:AJ560718
EMBL:AK226383EMBL:AY062467EMBL:AY081295EMBL:AY087803EMBL:AY093282EMBL:AY143889EMBL:BT000389
EMBL:CP002684EnsemblPlants:AT1G54780EnsemblPlants:AT1G54780.1entrez:841919EvolutionaryTrace:Q9ZVL6GeneID:841919Genevisible:Q9ZVL6
GO:GO:0003993GO:GO:0009507GO:GO:0009534GO:GO:0009535GO:GO:0009579GO:GO:0010206GO:GO:0016021
GO:GO:0016311GO:GO:0031977Gramene:AT1G54780.1hmmpanther:PTHR30373hmmpanther:PTHR30373:SF2HOGENOM:HOG000006075InParanoid:Q9ZVL6
InterPro:IPR007621iPTMnet:Q9ZVL6KEGG:ath:AT1G54780OMA:IPMVTYFPaxDb:Q9ZVL6PDB:3PTJPDB:3PVH
PDB:3PW9PDBsum:3PTJPDBsum:3PVHPDBsum:3PW9Pfam:PF04536Pfam:Q9ZVL6PhylomeDB:Q9ZVL6
PIR:H96589PRIDE:Q9ZVL6PRO:PR:Q9ZVL6ProteinModelPortal:Q9ZVL6Proteomes:UP000006548RefSeq:NP_564667.1SMR:Q9ZVL6
STRING:3702.AT1G54780.1TAIR:AT1G54780tair10-symbols:TLP18.3TMHMM:TMhelixUniGene:At.23520UniGene:At.71211UniProt:Q9ZVL6
Coordinates (TAIR10) chr1:+:20439533..20440953
Molecular Weight (calculated) 31140.30 Da
IEP (calculated) 9.37
GRAVY (calculated) -0.27
Length 285 amino acids
Sequence (TAIR10)
(BLAST)
001: METLLSPRAL SPPLNPKPLS LHQTKPTSHS LSLSKPTTFS GPKHLSTRFT KPESRNWLID AKQGLAALAL SLTLTFSPVG TALASEFNIL NDGPPKETYV
101: VDDAGVLSRV TKSDLKKLLS DLEYRKKLRL NFITVRKLTS KADAFEYADQ VLEKWYPSIE EGNNKGIVVL ITSQKEGAIT GGPAFIEAVG ENILDATVSE
201: NLPVLATDEK YNEAVYSSAK RLVAAIDGQP DPGGPTVKDS KRESNFKTKE ETDEKRGQFS LVVGGLLVIA FVVPMAQYFA YVSRK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)