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AT1G54770.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Fcf2 pre-rRNA processing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Fcf2 pre-rRNA processing protein; CONTAINS InterPro DOMAIN/s: Fcf2 pre-rRNA processing (InterPro:IPR014810); BEST Arabidopsis thaliana protein match is: Fcf2 pre-rRNA processing protein (TAIR:AT5G30495.1); Has 332 Blast hits to 332 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 124; Plants - 58; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z9Q4eggNOG:KOG3100EMBL:BT002835EMBL:BT004381EMBL:CP002684EnsemblPlants:AT1G54770EnsemblPlants:AT1G54770.1
entrez:841918GeneID:841918Gramene:AT1G54770.1hmmpanther:PTHR21686hmmpanther:PTHR21686:SF12HOGENOM:HOG000239453IntAct:Q84K05
InterPro:IPR014810KEGG:ath:AT1G54770OMA:IEPASEYPfam:PF08698PhylomeDB:Q84K05Proteomes:UP000006548RefSeq:NP_175875.1
STRING:3702.AT1G54770.1TAIR:AT1G54770UniGene:At.37169UniProt:Q84K05
Coordinates (TAIR10) chr1:+:20434803..20435815
Molecular Weight (calculated) 21681.40 Da
IEP (calculated) 10.85
GRAVY (calculated) -0.97
Length 189 amino acids
Sequence (TAIR10)
(BLAST)
001: MAETKQPLIG LKWEPKLPGL SLDLKTGSTR SKTAESSKSE LVDGLCLPPN DPRKINKMIR KQLKDTTGSN WFDMPAPTMT PELKRDLQLL KLRTVMDPAL
101: HYKKSVSRSK LAEKYFQIGT VIEPAEEFYG RLTKKNRKAT LADELVSDPK TALYRKRKVR EIEEKSRAVT NKKWNKKGNQ SKNTKPRRN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)