AT1G54710.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.977 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : homolog of yeast autophagy 18 (ATG18) H | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
homolog of yeast autophagy 18 (ATG18) H (ATG18H); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to starvation; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Breast carcinoma amplified sequence 3 (InterPro:IPR022175), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: homolog of yeast autophagy 18 (ATG18) G (TAIR:AT1G03380.1); Has 852 Blast hits to 850 proteins in 188 species: Archae - 0; Bacteria - 4; Metazoa - 369; Fungi - 255; Plants - 157; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:20417019..20420733 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 100519.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.56 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 927 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKSNSKVNIN NNGDNHNQTK NNGTNGFLPN SLKFISTCIR TASSGVRSAS ASVAASLSSD SHELKDQVLW SSFDRLHTSE SSFKNVLLLG YTNGFQVLDI 101: DDSNDVTEFV SRRDDPVTFL QMQPLPAKCD GVEGFRSSHP ILLAVADEAK GSGPIVTSRD GSVRNGYEDP LALSPTVVRF YSLRSHNYVH VLRFRSTVYM 201: VRCSPRIVAV GLGSQIYCFD ALTLENKFSV LSYPVPQLGN QGISGVNVGY GPMAVGARWL AYASNSPLSS SIGRLSPQNV TPPGVSPSTS PNNGNLVARY 301: AMESSKHLAA GLLNLGDKGY KTISKYCQDL KHDGPGPSLS SSPGRKVGRV GSHSAESDVV GTVIVKDFES RAIIAQFRAH TSPISALCFD PSGTLLVTAS 401: IHGNNINVFR IMPTPTKNGP GAQSYDWSSS HVPLYKLHRG MTSAVIQDIC FSSYSQWIAI VSSKSTCHIY VLSPFGGENV LEIRNSQFDG PTLAPTLSLP 501: WWSSPSFMTT HFSYPPPASV TLSVVSRIKC NNFFHAASSV VGKPTFPSGC LAAVFHQSVP QESQSSSPAL DYLLVYTPSG HVVQYKLIPS LGGDQAESNT 601: RNGATSGLTS EEELRVKVEP VQCWDVCRRA DWPEREENIC GLTYGGRKNA ELTVDTSDSE DQTKPLEKHH VYLANAEVLI NSGRKPIWQN SEISFYPMYP 701: PDSDGKNLNS HQGGGETEIG KVSANEVDIR RKDLLPVYDN FHSVYTSMRN RGFSGERDSD SSSSSDPGQV KEMHPFNGMV YPEDEERRGS AHFALTPNQN 801: PHTGIVTFKQ PVVSISSAVK DTDYIDDDAH VLPKNASLPA ETKIENSSGI SGDSNVSSNR SDMSMNAADE GEGPIDGSPN FEQFFEEVVS NETVTETEHK 901: DAPSDGKLDD DEDDDMLGGV FAFSEEG |
||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)