AT1G54680.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.995 What is SUBAcon? |
|
||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27290.1); Has 200 Blast hits to 200 proteins in 57 species: Archae - 0; Bacteria - 59; Metazoa - 0; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:20413211..20414482 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 24878.70 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.10 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.02 | ||||||||||||||||||||||||
| Length | 223 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAYLLLALL NWSLIDSVSR SIESVYVQED SVRTSKEMEI KTSPEEDWFS VVQHESGHFL VGYLLGVLPR HYEIPTLEAV RQNVSNVTGR VEFVGFEFLK 101: QVGAANQLMK DDVDGQMNQG NISSKTLNNF SCVILGGMVT EHILFGYSEG LYSDIVKLND VLRWLGFTES EKEAHIKWAV SNTVSLLHSH KEARVSLAET 201: MAKAKPISTC IEAIESAIST HQI |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)