suba logo
AT1G54680.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 0.995
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27290.1); Has 200 Blast hits to 200 proteins in 57 species: Archae - 0; Bacteria - 59; Metazoa - 0; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JBQTeggNOG:ENOG41118FPEMBL:AK221413EMBL:CP002684EnsemblPlants:AT1G54680EnsemblPlants:AT1G54680.1entrez:841909
ExpressionAtlas:Q56YB0GeneID:841909Gramene:AT1G54680.1hmmpanther:PTHR33471hmmpanther:PTHR33471:SF4HOGENOM:HOG000265031OMA:AISTHQI
PhylomeDB:Q56YB0Proteomes:UP000006548RefSeq:NP_175867.2STRING:3702.AT1G54680.1SUPFAM:SSF140990TAIR:AT1G54680UniGene:At.10837
UniGene:At.71292UniProt:Q56YB0
Coordinates (TAIR10) chr1:+:20413211..20414482
Molecular Weight (calculated) 24878.70 Da
IEP (calculated) 5.10
GRAVY (calculated) -0.02
Length 223 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAYLLLALL NWSLIDSVSR SIESVYVQED SVRTSKEMEI KTSPEEDWFS VVQHESGHFL VGYLLGVLPR HYEIPTLEAV RQNVSNVTGR VEFVGFEFLK
101: QVGAANQLMK DDVDGQMNQG NISSKTLNNF SCVILGGMVT EHILFGYSEG LYSDIVKLND VLRWLGFTES EKEAHIKWAV SNTVSLLHSH KEARVSLAET
201: MAKAKPISTC IEAIESAIST HQI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)