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AT1G54580.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : acyl carrier protein 2
Curator
Summary (TAIR10)
encodes an acyl carrier protein expressed in leaves, roots, and dry seeds. Gene expression is not regulated by light but downregulated by starvation and upregulated by increased level of exogenous sucrose.
Computational
Description (TAIR10)
acyl carrier protein 2 (ACP2); FUNCTIONS IN: acyl carrier activity; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Phosphopantetheine-binding (InterPro:IPR006163), Acyl carrier protein (ACP) (InterPro:IPR003231), Acyl carrier protein-like (InterPro:IPR009081), Phosphopantetheine attachment site (InterPro:IPR006162); BEST Arabidopsis thaliana protein match is: acyl carrier protein 3 (TAIR:AT1G54630.1); Has 6585 Blast hits to 6585 proteins in 2202 species: Archae - 0; Bacteria - 4416; Metazoa - 36; Fungi - 108; Plants - 352; Viruses - 2; Other Eukaryotes - 1671 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0236eggNOG:KOG1748EMBL:AC005388EMBL:AY062773EMBL:AY081661EMBL:CP002684EMBL:X57698
EnsemblPlants:AT1G54580EnsemblPlants:AT1G54580.1entrez:841900Gene3D:1.10.1200.10GeneID:841900Genevisible:P25701GO:GO:0000036
GO:GO:0009507Gramene:AT1G54580.1HAMAP:MF_01217hmmpanther:PTHR20863hmmpanther:PTHR20863:SF29HOGENOM:HOG000178184InParanoid:P25701
InterPro:IPR003231InterPro:IPR006162InterPro:IPR009081InterPro:IPR020806iPTMnet:P25701KEGG:ath:AT1G54580OMA:CARGSTF
PaxDb:P25701Pfam:P25701Pfam:PF00550Pfscan:PS50075PhylomeDB:P25701PIR:H96587PIR:S14964
PRIDE:P25701PRO:PR:P25701ProDom:PD000887PROSITE:PS00012PROSITE:PS50075ProteinModelPortal:P25701Proteomes:UP000006548
RefSeq:NP_175860.1scanprosite:PS00012SMART:SM00823SMR:P25701STRING:3702.AT1G54580.1SUPFAM:SSF47336TAIR:AT1G54580
tair10-symbols:ACP2TIGRfam:TIGR00517TIGRFAMs:TIGR00517UniGene:At.47521UniProt:P25701
Coordinates (TAIR10) chr1:+:20389572..20390770
Molecular Weight (calculated) 14528.50 Da
IEP (calculated) 4.97
GRAVY (calculated) 0.08
Length 136 amino acids
Sequence (TAIR10)
(BLAST)
001: MASIAASASI SLQARPRQLA IAASQVKSFS NGRRSSLSFN LRQLPTRLTV SCAAKPETVD KVCAVVRKQL SLKEADEITA ATKFAALGAD SLDTVEIVMG
101: LEEEFGIEMA EEKAQSIATV EQAAALIEEL LFEKAK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)