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AT1G54520.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18431481 (2008): plastid
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1517 (InterPro:IPR010903); Has 276 Blast hits to 275 proteins in 83 species: Archae - 0; Bacteria - 108; Metazoa - 6; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4371eggNOG:ENOG410IFNEEMBL:AY085198EMBL:AY093070EMBL:CP002684EnsemblPlants:AT1G54520EnsemblPlants:AT1G54520.1
entrez:841894GeneID:841894GO:GO:0009507GO:GO:0016021Gramene:AT1G54520.1hmmpanther:PTHR33975hmmpanther:PTHR33975:SF2
HOGENOM:HOG000233779InterPro:IPR010903KEGG:ath:AT1G54520OMA:RHPEYWVPfam:PF07466PhylomeDB:Q8RWI0Proteomes:UP000006548
RefSeq:NP_564660.1STRING:3702.AT1G54520.1TAIR:AT1G54520TMHMM:TMhelixUniGene:At.21420UniProt:Q8RWI0
Coordinates (TAIR10) chr1:+:20363565..20365874
Molecular Weight (calculated) 42845.90 Da
IEP (calculated) 9.59
GRAVY (calculated) -0.23
Length 391 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSSTFLEL TPFQWNQPLP YTQRPHHRTV LLYSKPQRRS NSIRLQISVK YKQSTSSSDP DLRSNFNPFE QIAIQVKKAL DSLKKPAIAA VLLGLLLFYD
101: PNSALAASGG RIGGNSFSSR SRSSSSSSSQ SYSVPRTSNP SFSYSARTAP YYGPSPFGGG FVGPAVGFGF GGFSSFSLIL VGFAAFVLVS GFLSDRSQDD
201: SILTDTQKTS VIKLQVGLLG LGRTLQQDFN RLAESSDTST PEGLSYVLTE ATLALLRHPD YCISCYSSVD VKPSIEKGEK RFNQLSIEER GKFDEETLVN
301: VNSIKRQSSK IRKASGFSNE YIVVTILMAA EGIHKLPPIN GTTDLKEALL KLGSIPRNKI MAVEVLWTPQ NEADALSERE LLEDYPLLRP L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)